Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCF_002265985.1/fasta/hub_GCF_002265985.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              53
Total size of examined sequences (bp):           4937236
Total number of identified SSRs:                 27
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	7
5	4
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	4		1			5
GC	-	-	-	2					2
CAG	-	-	1						1
CCG	-	-	1						1
CGC	-	-	1						1
CGG	-	-	1						1
GCG	-	-	2						2
GCT	-	-	1						1
ATTTT	1								1
CGCGC	1								1
GGCGC	1								1
TGCGC	1								1
CGACTT	1								1
CGCCAG	1								1
CTCCGC	1								1
GCGTGT	1								1
GCTGGC	1								1
GGAAGA		1							1
TGATGC	1								1
TGGTTG	1								1
TTGCCC								1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	6		1			7
AGC/CTG	-	-	2						2
CCG/CGG	-	-	5						5
AAAAT/ATTTT	1								1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	2								2
AACCAC/GGTTGT	1								1
AAGAGG/CCTCTT		1							1
AAGGGC/CCCTTG								1	1
AAGTCG/ACTTCG	1								1
ACACGC/CGTGTG	1								1
AGCATC/ATGCTG	1								1
AGCGCC/CGCTGG	2								2
AGGCGG/CCGCCT	1								1
