Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-116/megassr/results/hub_GCF_002265935.1/fasta/hub_GCF_002265935.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              102
Total size of examined sequences (bp):           5266492
Total number of identified SSRs:                 34
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	9
3	6
4	4
5	2
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-									1	1
AT	-	-	-	2																							2
CG	-	-	-	4		1																					5
GC	-	-	-	2																							2
AGC	-	-	1																								1
CCG	-	-	2																								2
CGG	-	-	1																								1
CTG	-	-				1																					1
GCG	-	-	1																								1
ATGG	-			1																							1
CCGA	-	1																									1
TATT	-	1																									1
TGGC	-	1																									1
CGCGC	1																										1
GGCGC	1																										1
ACCGCC	1																										1
ATGGTC				1																							1
CAGCAT	1																										1
CCTGTT							1																				1
CGACTT	1																										1
CTGGCG	1																										1
GCCAGC	1																										1
GTGGTC					1																						1
TACTGA												1															1
TCATGG	1																										1
TCTTCC		1																									1
TGGTAC			1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-									1	1
AT/AT	-	-	-	2																							2
CG/CG	-	-	-	6		1																					7
AGC/CTG	-	-	1			1																					2
CCG/CGG	-	-	4																								4
AAAT/ATTT	-	1																									1
ACCG/CGGT	-	1																									1
AGCC/CTGG	-	1																									1
ATCC/ATGG	-			1																							1
CCGCG/CGCGG	2																										2
AACAGG/CCTGTT							1																				1
AAGAGG/CCTCTT		1																									1
AAGTCG/ACTTCG	1																										1
ACCACG/CGTGGT					1																						1
ACCAGT/ACTGGT			1																								1
ACCATG/ATGGTC	1			1																							2
ACCGCC/CGGTGG	1																										1
ACTGAT/AGTATC												1															1
AGCATC/ATGCTG	1																										1
AGCGCC/CGCTGG	2																										2
