Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-115/megassr/results/hub_GCF_002265925.1/fasta/hub_GCF_002265925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              39
Total size of examined sequences (bp):           4677388
Total number of identified SSRs:                 24
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
4	1
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	4	4
GC	-	-	-	1	1
TG	-	-	-	1	1
CCG	-	-	3		3
CGG	-	-	1		1
CTG	-	-		1	1
GCC	-	-	1		1
GCG	-	-	1		1
GCT	-	-	1		1
GCCA	-	1			1
CGCGC	1				1
GCGAC	1				1
GGCGC	1				1
TGCGC	1				1
ATGGTC				1	1
CGACTT	1				1
CTGGCG	1				1
GCTGGC	1				1
GTGGTC		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
CG/CG	-	-	-	5	5
AGC/CTG	-	-	1	1	2
CCG/CGG	-	-	6		6
AGCC/CTGG	-	1			1
ACGCG/CGCGT	1				1
AGCGC/CGCTG	1				1
CCGCG/CGCGG	2				2
AAGTCG/ACTTCG	1				1
ACCACG/CGTGGT		1			1
ACCATG/ATGGTC				1	1
AGCGCC/CGCTGG	2				2
