Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-61/megassr/results/hub_GCF_002180355.1/fasta/hub_GCF_002180355.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              21
Total size of examined sequences (bp):           1801542
Total number of identified SSRs:                 10
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	1
5	3
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-		1				1	2
AGA	-	-	1							1
GCT	-	-	1							1
TGAC	-	1								1
GTAAA	1									1
TGTTT	1									1
TTTAA	1									1
GAAAAA	1									1
TTCTGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-		1				1	2
AAG/CTT	-	-	1							1
AGC/CTG	-	-	1							1
ACTG/AGTC	-	1								1
AAAAC/GTTTT	1									1
AAAGT/ACTTT	1									1
AAATT/AATTT	1									1
AAAAAG/CTTTTT	1									1
AAGCAG/CTGCTT	1									1
