Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-141/megassr/results/hub_GCF_002135575.1/fasta/hub_GCF_002135575.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           2013384
Total number of identified SSRs:                 15
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	2
4	2
5	5
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CT	-	-	-	2	2
TA	-	-	-	1	1
TAT	-	-	1		1
TTC	-	-	1		1
AAAT	-	1			1
GTCA	-	1			1
CTTTA	1				1
TAATT	1				1
TGTTT	1				1
TTAAA	1				1
TTTTG	1				1
GAAAAA	1				1
GCAGAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	2	2
AT/AT	-	-	-	2	2
AAG/CTT	-	-	1		1
AAT/ATT	-	-	1		1
AAAT/ATTT	-	1			1
ACTG/AGTC	-	1			1
AAAAC/GTTTT	2				2
AAAGT/ACTTT	1				1
AAATT/AATTT	2				2
AAAAAG/CTTTTT	1				1
AAGCAG/CTGCTT	1				1
