Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCF_002135445.1/fasta/hub_GCF_002135445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              33
Total size of examined sequences (bp):           1973342
Total number of identified SSRs:                 10
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
4	1
5	4
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1		1	2
TTC	-	-	1				1
GTCA	-	1					1
CTTTA	1						1
TAATT	1						1
TGTTT	1						1
TTAAA	1						1
GAAAAA	1						1
GCAGAA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1		1	2
AAG/CTT	-	-	1				1
ACTG/AGTC	-	1					1
AAAAC/GTTTT	1						1
AAAGT/ACTTT	1						1
AAATT/AATTT	2						2
AAAAAG/CTTTTT	1						1
AAGCAG/CTGCTT	1						1
