Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-33/megassr/results/hub_GCF_002071635.1/fasta/hub_GCF_002071635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              83
Total size of examined sequences (bp):           4895392
Total number of identified SSRs:                 20
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
4	1
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	2						2
GC	-	-	-	2						2
CCG	-	-	1							1
CGC	-	-	1							1
CGG	-	-	1							1
GCA	-	-							1	1
GCC	-	-	1							1
GCT	-	-	1							1
GGT	-	-	1							1
GCCA	-	1								1
GCGCG	1									1
GGCGC	1									1
AAGCGT		1								1
CGACTT	1									1
CTGGCG	1									1
GACCAT							1			1
GCTGGC	1									1
GGCGGT	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	4						4
ACC/GGT	-	-	1							1
AGC/CTG	-	-	1						1	2
CCG/CGG	-	-	4							4
AGCC/CTGG	-	1								1
CCGCG/CGCGG	2									2
AAGCGT/ACGCTT		1								1
AAGTCG/ACTTCG	1									1
ACCATG/ATGGTC							1			1
ACCGCC/CGGTGG	1									1
AGCGCC/CGCTGG	2									2
