Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-110/megassr/results/hub_GCF_002066555.1/fasta/hub_GCF_002066555.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              76
Total size of examined sequences (bp):           4850410
Total number of identified SSRs:                 25
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	8
4	1
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG	-	-	-	2											2
GC	-	-	-	2											2
AGC	-	-	1												1
CAG	-	-	1												1
CCG	-	-	2												2
CGC	-	-	1												1
CGG	-	-		1											1
CTG	-	-												1	1
GCG	-	-	1												1
TAAA	-	1													1
ATTTT	1														1
CGCGC	1														1
CGCTG	1														1
GGCGC	1														1
ACCAGT	1														1
ATGGTC				1											1
CAAGGT			1												1
CGACTT	1														1
CTGGCG	1														1
GCCAGC	1														1
GCGCTG	1														1
TCGTTG			1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG/CG	-	-	-	4											4
AGC/CTG	-	-	2											1	3
CCG/CGG	-	-	4	1											5
AAAT/ATTT	-	1													1
AAAAT/ATTTT	1														1
AGCGC/CGCTG	1														1
CCGCG/CGCGG	2														2
AACGAC/CGTTGT			1												1
AAGGTC/ACCTTG			1												1
AAGTCG/ACTTCG	1														1
ACCAGT/ACTGGT	1														1
ACCATG/ATGGTC				1											1
AGCGCC/CGCTGG	3														3
