Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-105/megassr/results/hub_GCF_002064495.1/fasta/hub_GCF_002064495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              79
Total size of examined sequences (bp):           4829236
Total number of identified SSRs:                 24
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	7
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
CG	-	-	-	3		1	4
GC	-	-	-	2			2
CCG	-	-		1			1
CGG	-	-	2				2
GCC	-	-	1				1
GCG	-	-	1				1
GCT	-	-	1				1
TCA	-	-				1	1
GCCA	-	1					1
CGCGC	1						1
GGCGC	1						1
TTTTC	1						1
CGACTT	1						1
CTGGCG	1						1
GCTGGC	1						1
TCATGC	1						1
TGGTCG			1				1
TTTTTA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	5		1	6
AGC/CTG	-	-	1				1
ATC/ATG	-	-				1	1
CCG/CGG	-	-	4	1			5
AGCC/CTGG	-	1					1
AAAAG/CTTTT	1						1
CCGCG/CGCGG	2						2
AAAAAT/ATTTTT	1						1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT			1				1
AGCATG/ATGCTC	1						1
AGCGCC/CGCTGG	2						2
