Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCF_002064305.1/fasta/hub_GCF_002064305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              522
Total size of examined sequences (bp):           4803687
Total number of identified SSRs:                 26
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	6
3	7
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1	1
CG	-	-	-	4																								4
GC	-	-	-	2																								2
AGC	-	-	1																									1
CCG	-	-	2																									2
GCA	-	-						1																				1
GCC	-	-	1																									1
GCG	-	-	2																									2
GCCA	-	1																										1
CTGGG						1																						1
GCGCC	1																											1
GCGCG	1																											1
TGGGC				1																								1
ACCACG							1																					1
CAACCA	1																											1
CCAGAG			1																									1
CGCCAG	1																											1
GAAGTC	1																											1
GCTGGC	1																											1
TTTCTT	1																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1	1
CG/CG	-	-	-	6																								6
AGC/CTG	-	-	1					1																				2
CCG/CGG	-	-	5																									5
AGCC/CTGG	-	1																										1
AGCCC/CTGGG				1		1																						2
CCGCG/CGCGG	2																											2
AAAAAG/CTTTTT	1																											1
AACCAC/GGTTGT	1																											1
AAGTCG/ACTTCG	1																											1
ACCACG/CGTGGT							1																					1
AGAGCC/CTCTGG			1																									1
AGCGCC/CGCTGG	2																											2
