Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-31/megassr/results/hub_GCF_002019755.1/fasta/hub_GCF_002019755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1455381
Total number of identified SSRs:                 28
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	11
3	5
4	1
5	9
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AC	-	-	-	1			1
AT	-	-	-	6		1	7
TA	-	-	-	3			3
ATC	-	-	1				1
ATT	-	-	1				1
TAT	-	-	1				1
TCA	-	-	1	1			2
TAAT	-	1					1
AACAT	1						1
ACATA	1						1
ACATC	1						1
ATAAA	1						1
ATATA	1						1
ATTAA	1						1
TAATA	1						1
TATAT	1						1
TGTGT	1						1
ATCTGA		1					1
TCCTTA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-	1			1
AT/AT	-	-	-	9		1	10
AAT/ATT	-	-	2				2
ATC/ATG	-	-	2	1			3
AATT/AATT	-	1					1
AAAAT/ATTTT	1						1
AAATT/AATTT	1						1
AACAC/GTGTT	1						1
AACAT/ATGTT	2						2
AATAT/ATATT	3						3
ACATC/ATGTG	1						1
AAGGAT/ATCCTT	1						1
AATCTG/AGATTC		1					1
