Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-32/megassr/results/hub_GCF_001886115.1/fasta/hub_GCF_001886115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              78
Total size of examined sequences (bp):           3862291
Total number of identified SSRs:                 21
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
5	7
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	2	2
AAT	-	-		1	1
CAG	-	-	1		1
CTT	-	-	1		1
TCA	-	-	1		1
AAAAG	3				3
TAAAA	1				1
TGCCT	1				1
TTCGT	1				1
TTTAT	1				1
AATTCA	1				1
AGAAAA	1				1
ATTGCA	1				1
GAAAAA	1				1
GCATCG	1				1
TCAGCA	2				2
TCCCAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAG/CTT	-	-	1		1
AAT/ATT	-	-		1	1
AGC/CTG	-	-	1		1
ATC/ATG	-	-	1		1
AAAAG/CTTTT	3				3
AAAAT/ATTTT	2				2
AAACG/CGTTT	1				1
AAGGC/CCTTG	1				1
AAAAAG/CTTTTT	2				2
AAATTC/AATTTG	1				1
AATCCC/ATTGGG	1				1
AATTGC/AATTGC	1				1
AGCATC/ATGCTG	2				2
ATCGGC/ATGCCG	1				1
