Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-31/megassr/results/hub_GCF_001761405.1/fasta/hub_GCF_001761405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           3811650
Total number of identified SSRs:                 46
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	11
5	5
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	total
CG	-	-	-	2	1																																					3
GC	-	-	-	4	3																																					7
CAG	-	-	1																																							1
CGC	-	-	2																																							2
CGG	-	-	2																																							2
GCC	-	-	2																																							2
GCG	-	-	1																																							1
GGC	-	-	1																																							1
TGA	-	-	1																																							1
TGG	-	-	1																																							1
CGCGG	1																																									1
GCGAT	1																																									1
GCGCC	1																																									1
TGGCC	1																																									1
TGGGC																													1													1
AAGCAG													1																													1
AGAGGC															1																							1				2
AGCGAC									1																																	1
CACAGA						1																																				1
CCGGCT	1																																									1
CGATAT	1																																									1
CGGCAT	1																																									1
CGTCTG	1																																									1
CTCTGC																																									1	1
CTGCTA		1																																								1
GAGAAG	1																																									1
GCTGTC			1																																							1
GGCTTC				1																																						1
GTTTCA	1																																									1
TAACGG	1																																									1
TCGTGC						1																																				1
TGCGCC	1																																									1
TGTCCG											1																															1
TGTCGC				1																																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	total
CG/CG	-	-	-	6	4																																					10
ACC/GGT	-	-	1																																							1
AGC/CTG	-	-	1																																							1
ATC/ATG	-	-	1																																							1
CCG/CGG	-	-	8																																							8
AGCCC/CTGGG																													1													1
AGGCC/CCTGG	1																																									1
ATCGC/ATGCG	1																																									1
CCGCG/CGCGG	2																																									2
AAACTG/AGTTTC	1																																									1
AACGGT/ACCGTT	1																																									1
AAGCAG/CTGCTT													1																													1
AAGCCG/CGGCTT				1																																						1
AAGGAG/CCTTCT	1																																									1
ACACAG/CTGTGT						1																																				1
ACACGG/CCGTGT											1																															1
ACAGCG/CGCTGT			1	1					1																																	3
ACGAGC/CGTGCT						1																																				1
ACGCAG/CGTCTG	1																																									1
ACTGCT/AGCAGT		1																																								1
AGAGGC/CCTCTG															1																							1			1	3
AGCCGG/CCGGCT	1																																									1
AGGCGC/CCTGCG	1																																									1
ATATCG/ATATCG	1																																									1
ATCGGC/ATGCCG	1																																									1
