Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCF_001699735.1/fasta/hub_GCF_001699735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              59
Total size of examined sequences (bp):           1864315
Total number of identified SSRs:                 13
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
CT	-	-	-			1	1
GGC	-	-	2				2
AATAA	1						1
TAATT	1						1
TTTTG	1						1
AAATCC	1						1
AAATTT	1						1
GCAAAA	1						1
GGAATA	1						1
TAATTT	1						1
TACCGC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AG/CT	-	-	-			1	1
AT/AT	-	-	-	1			1
CCG/CGG	-	-	2				2
AAAAC/GTTTT	1						1
AAAAT/ATTTT	1						1
AAATT/AATTT	1						1
AAAAGC/CTTTTG	1						1
AAAATT/AATTTT	1						1
AAATCC/ATTTGG	1						1
AAATTT/AAATTT	1						1
AATAGG/ATTCCT	1						1
ACCGCT/AGCGGT	1						1
