Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-77/megassr/results/hub_GCF_001699725.1/fasta/hub_GCF_001699725.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              90
Total size of examined sequences (bp):           1881548
Total number of identified SSRs:                 13
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
5	4
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AG	-	-	-				1	1
GCC	-	-	1					1
GGC	-	-	1					1
AAATT	1							1
ATTTT	1							1
CAAAA	1							1
TATTT	1							1
AAATTA	1							1
AAATTT	1							1
GCAAAA	1							1
GGAATA	1							1
GGATTT	1							1
TACCGC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AG/CT	-	-	-				1	1
CCG/CGG	-	-	2					2
AAAAC/GTTTT	1							1
AAAAT/ATTTT	2							2
AAATT/AATTT	1							1
AAAAGC/CTTTTG	1							1
AAAATT/AATTTT	1							1
AAATCC/ATTTGG	1							1
AAATTT/AAATTT	1							1
AATAGG/ATTCCT	1							1
ACCGCT/AGCGGT	1							1
