Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-30/megassr/results/hub_GCF_001657435.1/fasta/hub_GCF_001657435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              340
Total size of examined sequences (bp):           4965201
Total number of identified SSRs:                 79
Number of SSR containing sequences:              58
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	29
3	12
4	1
5	14
6	23

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-	13	2	1		16
TA	-	-	-	11	2			13
AAG	-	-	1					1
AAT	-	-	1					1
ATA	-	-	2			1		3
ATT	-	-		1				1
TAA	-	-			1			1
TAC	-	-	1					1
TGA	-	-	1					1
TGC	-	-	1					1
TTA	-	-					1	1
TTC	-	-	1					1
ATTA	-		1					1
AAAAT	1							1
AAGAA	1							1
AATAT	2							2
ATATA	1							1
ATATT	1							1
ATTAA	1							1
ATTAT	1							1
ATTTT	1							1
GAAAT	1							1
TAATT	1							1
TTAAA	1							1
TTATA	1							1
TTGCA		1						1
AAAATC	1							1
AAGCAG	1							1
AGTAAG	1							1
AGTAGA	1							1
ATAACA	1							1
ATAAGA	1							1
CAAATG	1							1
CATCTC	1							1
CCAGCT		1						1
CTGTTG	1							1
GATCCA	1							1
GTAGTT		1						1
GTTAAT	1							1
GTTACA	1							1
TAGCTT	1							1
TCATGA	1							1
TCTAAA	1							1
TCTTTA		1						1
TGCCAT	1							1
TGTGAC			1					1
TTACTT	1							1
TTTATT	2							2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	24	4	1		29
AAG/CTT	-	-	2					2
AAT/ATT	-	-	3	1	1	1	1	7
ACT/AGT	-	-	1					1
AGC/CTG	-	-	1					1
ATC/ATG	-	-	1					1
AATT/AATT	-		1					1
AAAAG/CTTTT	1							1
AAAAT/ATTTT	2							2
AAATG/ATTTC	1							1
AAATT/AATTT	3							3
AATAT/ATATT	6							6
AATGC/ATTGC		1						1
AAAAAT/ATTTTT	2							2
AAAAGT/ACTTTT	1							1
AAAATC/ATTTTG	1							1
AAAGAT/ATCTTT		1						1
AAAGCT/AGCTTT	1							1
AAATCT/AGATTT	1							1
AAATGC/ATTTGC	1							1
AACAAT/ATTGTT	1							1
AACAGC/CTGTTG	1							1
AACATT/AATGTT	1							1
AACTAC/AGTTGT		1						1
AACTGT/ACAGTT	1							1
AAGAAT/ATTCTT	1							1
AAGAGT/ACTCTT	1							1
AAGCAG/CTGCTT	1							1
AAGTAG/ACTTCT	1							1
AATGGC/ATTGCC	1							1
ACAGTC/ACTGTG			1					1
AGATCC/ATCTGG	1							1
AGATGG/ATCTCC	1							1
AGCTCC/AGCTGG		1						1
ATCATG/ATCATG	1							1
