Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-30/megassr/results/hub_GCF_001652545.1/fasta/hub_GCF_001652545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              110
Total size of examined sequences (bp):           4348519
Total number of identified SSRs:                 64
Number of SSR containing sequences:              42
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	33
4	1
5	9
6	21

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
CAC	-	-	1	1
CCA	-	-	2	2
CCG	-	-	4	4
CGC	-	-	2	2
CGG	-	-	7	7
GAC	-	-	1	1
GCC	-	-	10	10
GCG	-	-	2	2
GGC	-	-	3	3
TCA	-	-	1	1
GGCC	-	1		1
CCCGG	1			1
CCGCC	1			1
CCGCG	1			1
CGACG	1			1
CGGCG	2			2
GGCGC	1			1
TCGGG	1			1
TCGGT	1			1
CATGGG	1			1
CCGCGC	1			1
CCGGCC	1			1
CGGGGC	1			1
CGTATT		1		1
CGTCGC	1	1		2
CGTTGT	1			1
CTCCGG	1			1
CTGGTG	1			1
GCACCA	1			1
GCCCGC	1			1
GCCGAC	1			1
GCCGGG		1		1
GGCGGT	3			3
GTCGCG	1			1
TCGATG	1			1
TGGCCG	1			1
TGGCGG	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
ACC/GGT	-	-	3	3
ACG/CGT	-	-	1	1
ATC/ATG	-	-	1	1
CCG/CGG	-	-	28	28
CCGG/CCGG	-	1		1
AACCG/CGGTT	1			1
ACCCG/CGGGT	1			1
ACGCG/CGCGT	1			1
CCCCG/CGGGG	1			1
CCCGG/CCGGG	1			1
CCGCG/CGCGG	4			4
AACGAC/CGTTGT	1			1
AATACG/ATTCGT		1		1
ACATCG/ATGTCG	1			1
ACCAGC/CTGGTG	2			2
ACCGCC/CGGTGG	4			4
ACCGCG/CGCGGT	1			1
ACGCCG/CGGCGT	1			1
ACGGCC/CCGTGG	1			1
ACGGCG/CCGTCG	1	1		2
AGCCGG/CCGGCT	1			1
ATGCCC/ATGGGC	1			1
CCCCGG/CCGGGG	2	1		3
CCCGCG/CGCGGG	2			2
