Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCF_001608495.1/fasta/hub_GCF_001608495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              368
Total size of examined sequences (bp):           1485885
Total number of identified SSRs:                 31
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	4
4	1
5	7
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-	3			1	4
TA	-	-	-	5		1		6
ATA	-	-	1					1
ATT	-	-	1					1
CAC	-	-	1					1
TCA	-	-	1					1
TAAC	-				1			1
ACATA	1							1
ACATC	1							1
ATAAA	1							1
TATAC	1							1
TATGT	1							1
TGTGT	1							1
TTATA	1							1
AAAACA	1							1
AGGTGC	1							1
CAACTA		3						3
CAACTG		1						1
TCAGCT	1							1
TTATGG		1						1
TTCATC		1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	8		1	1	10
AAT/ATT	-	-	2					2
ACC/GGT	-	-	1					1
ATC/ATG	-	-	1					1
AACT/AGTT	-				1			1
AAAAT/ATTTT	1							1
AACAC/GTGTT	1							1
AACAT/ATGTT	2							2
AATAT/ATATT	1							1
ACATC/ATGTG	1							1
ACTAT/AGTAT	1							1
AAAAAC/GTTTTT	1							1
AACCAT/ATGGTT		1						1
AACTAC/AGTTGT		3						3
AACTGC/AGTTGC		1						1
AAGATG/ATCTTC		1						1
AAGCTG/AGCTTC	1							1
ACCTGC/AGGTGC	1							1
