Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCF_001601855.1/fasta/hub_GCF_001601855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              777
Total size of examined sequences (bp):           20501737
Total number of identified SSRs:                 62983
Number of SSR containing sequences:              633
Number of sequences containing more than 1 SSR:  504
Number of SSRs present in compound formation:    25560


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	9780
2	34687
3	6845
4	5045
5	4611
6	2015

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	606	488	403	375	317	281	276	263	204	192	160	132	120	94	73	85	80	65	75	72	104	46	54	33	30	23	27	15	21	20	17	12	16	21	14	12	11	8	10	9	5	7	8	5	3	8	6	9	1	3	1	1	2	5	4	3	7	2	1	4	1	2	3	3	1			1	1	3		3				1	2			1		2	1	2					1		2		1	1						1									1											1										1																			1	4986
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	570	422	412	364	338	258	269	238	211	191	173	149	84	89	63	75	65	83	67	53	93	50	46	32	31	23	30	31	17	10	22	10	16	18	14	8	7	7	14	8	6	13	8	5	9	5	3	7	6	3	2	2	4	2	2	3	1	3	5	2	2	3	1	2	1		2	2		1		1	1		2	1		3		2	1	1	1	1	2	1	1	1	1		1	1	1			1						1																				1	1							1																				4794
AC	-	-	-	19	18	4	2		1																																																																																																																																																														44
AG	-	-	-	4	6	1	3	1		1																																																																																																																																																													16
AT	-	-	-	2746	1921	1773	1809	1772	1735	1600	1357	1186	1041	848	719	597	576	445	392	303	255	178	133	81	74	51	21	19	8	9	6	8	1	1	1																																																																																																																																				21666
CA	-	-	-	8	3	3		2	1																																																																																																																																																														17
CT	-	-	-	1	1	3		1	1																																																																																																																																																														7
GA	-	-	-	4			1	1																																																																																																																																																															6
GC	-	-	-	1																																																																																																																																																																			1
GT	-	-	-	9	8	6	2																																																																																																																																																																25
TA	-	-	-	2266	1410	1170	1142	1064	918	881	763	632	537	429	340	273	262	219	149	117	88	68	37	28	17	14	11	3	2	3		1	1	1			2																																																																																																																																		12848
TC	-	-	-	6	3	1	1	2																																																																																																																																																															13
TG	-	-	-	22	11	5	4	2																																																																																																																																																															44
AAC	-	-	21	14	5	1	1	2				1	1																																																																																																																																																										46
AAG	-	-	12	8	3	1	1																																																																																																																																																																25
AAT	-	-	380	232	187	146	113	73	40	27	24	9	7	8	3	2	1		1	1							1																																																																																																																																												1255
ACA	-	-	6		3	1																																																																																																																																																																	10
ACG	-	-	1																																																																																																																																																																				1
ACT	-	-	4	6	3																																																																																																																																																																		13
AGA	-	-	7	2	4	6			1																																																																																																																																																														20
AGG	-	-	3																																																																																																																																																																				3
AGT	-	-	5	3	2			1																																																																																																																																																															11
ATA	-	-	375	184	189	140	89	51	32	25	17	7	9	4	4	2	2	2	2	1	1		1																	1																																																																																																																															1138
ATC	-	-	37	18	11	3	2				1																																																																																																																																																												72
ATG	-	-	40	27	9	2	1		1	1	1		1	1																																																																																																																																																									84
ATT	-	-	286	178	164	117	82	55	27	23	16	15	9	6	4	1	2	2	2				1				1																																																																																																																																												991
CAA	-	-	8	1	2	3	2				2		1																																																																																																																																																										19
CAC	-	-			1																																																																																																																																																																		1
CAT	-	-	15	9	2	2	2																																																																																																																																																																30
CCA	-	-	1																																																																																																																																																																				1
CTA	-	-	2	3	1		1	2	1																																																																																																																																																														10
CTT	-	-	9	2	1	1	1	1																																																																																																																																																															15
GAA	-	-	20	17	4	3		1																																																																																																																																																															45
GAC	-	-			1																																																																																																																																																																		1
GAG	-	-	2	1	1																																																																																																																																																																		4
GAT	-	-	24	11	4	3	3																																																																																																																																																																45
GGT	-	-	2		1																																																																																																																																																																		3
GTA	-	-	3	2	1		1										1																																																																																																																																																						8
GTT	-	-	6	3	2	3	2		1							1																																																																																																																																																							18
TAA	-	-	172	116	91	75	52	34	28	13	6	8	4	3	1	1		2	3					1																	1																																																																																																																														611
TAC	-	-	20	7	3	2	1		1																																																																																																																																																														34
TAG	-	-	20	8	4	1	2	1			1																																																																																																																																																												37
TAT	-	-	386	241	188	139	115	74	44	32	26	17	12	7	1	1																																																																																																																																																							1283
TCA	-	-	30	11	6	4	1	1	1								1																																																																																																																																																						55
TCC	-	-	1	2																																																																																																																																																																			3
TCG	-	-	1																																																																																																																																																																				1
TCT	-	-	7	5	4	2																																																																																																																																																																	18
TGA	-	-	17	7		2						1																																																																																																																																																											27
TGG	-	-	1																																																																																																																																																																				1
TGT	-	-	10	5	5	1	1	1								1																																																																																																																																																							24
TTA	-	-	250	135	94	94	66	49	26	18	7	14	12	5	3	2	1	1			1																																																																																																																																																		778
TTC	-	-	22	19	7	2	5																																																																																																																																																																55
TTG	-	-	22	8	5	2	5	1	3	1		1		1																																																																																																																																																									49
AAAC	-	11	2	4		1																																																																																																																																																																	18
AAAG	-	12	3	2	1	1																																																																																																																																																																	19
AAAT	-	391	230	113	54	11	6	4	1																																																																																																																																																														810
AACA	-	4	3	1																																																																																																																																																																			8
AAGA	-	2		1																																																																																																																																																																			3
AATA	-	211	160	91	45	18	9	7		1	1																																																																																																																																																												543
AATG	-	3	2																																																																																																																																																																				5
AATT	-	5					1																																																																																																																																																																6
ACAA	-	2																																																																																																																																																																					2
ACAT	-	25	8	6	2	1	2	1			1					1																																																																																																																																																							47
AGAA	-	3	1																																																																																																																																																																				4
ATAA	-	368	185	90	36	16	7	6	7	1	1	1					1																																																																																																																																																						719
ATAC	-	59	22	9	8	1	1	2	2	1	2		1							1																																																																																																																																																			109
ATAG	-	1	1																																																																																																																																																																				2
ATCA	-		1																																																																																																																																																																				1
ATGA	-	2	1																																																																																																																																																																				3
ATGT	-	20	12	5	1	1		1																																																																																																																																																															40
ATTA	-	4	2			1																																																																																																																																																																	7
ATTC	-	10	2		1																																																																																																																																																																		13
ATTT	-	194	108	72	33	10	7	1																																																																																																																																																															425
CAAA	-	3		2			1								1																																																																																																																																																								7
CATA	-	16	3	1	1		1			1																																																																																																																																																													23
CATT	-	2																																																																																																																																																																					2
CTTT	-	3																																																																																																																																																																					3
GAAA	-	5	2	1	1	1																																																																																																																																																																	10
GAAG	-	1																																																																																																																																																																					1
GAAT	-	1	1			1																																																																																																																																																																	3
GAGT	-																			1																																																																																																																																																			1
GATA	-	1																																																																																																																																																																					1
GCTA	-	1																																																																																																																																																																					1
GTAG	-	2																																																																																																																																																																					2
GTAT	-	18	8	5	2	3	1				1																																																																																																																																																												38
TAAA	-	116	66	23	8	1	2	2	1																																																																																																																																																														219
TAAT	-	2				1																																																																																																																																																																	3
TACA	-	9	3	2			1																																																																																																																																																																15
TAGA	-	1																																																																																																																																																																					1
TAGC	-	1																																																																																																																																																																					1
TATC	-	1																																																																																																																																																																					1
TATG	-	41	27	10	5	2	4	1	4		1																																																																																																																																																												95
TATT	-	368	234	92	46	16	4	3	2	1	2																																																																																																																																																												768
TCAT	-	1			1																																																																																																																																																																		2
TCCT	-	1																																																																																																																																																																					1
TCTT	-	4	1																																																																																																																																																																				5
TGAA	-						1																																																																																																																																																																1
TGAT	-	1		1										1																																																																																																																																																									3
TGTA	-	15	10	3	3	2						1																																																																																																																																																											34
TGTT	-	5	1		1																																																																																																																																																																		7
TTAA	-	8	4	1																																																																																																																																																																			13
TTAT	-	216	119	57	19	12	4	2	2	1																																																																																																																																																													432
TTCA	-	1																																																																																																																																																																					1
TTCT	-	6	2	1	1																																																																																																																																																																		10
TTGT	-	2	2		1																																																																																																																																																																		5
TTTA	-	240	151	65	27	14	3	3		1																																																																																																																																																													504
TTTC	-	16	6	3		1									1																																																																																																																																																								27
TTTG	-	11	1	2	1	2		2		1					1																																																																																																																																																								21
AAAAC	16	5	2																																																																																																																																																																				23
AAAAG	68	17	3	3											1																																																																																																																																																								92
AAAAT	365	139	66	21	6	3	2	2														1																																																																																																																																																	605
AAACA	4		1																																																																																																																																																																				5
AAAGA	10	1	3																																																																																																																																																																				14
AAAGG	1	1																																																																																																																																																																					2
AAATA	112	57	26	3																																																																																																																																																																			198
AAATC	4		1																																																																																																																																																																				5
AAATG	10	1																																																																																																																																																																					11
AAATT	9	3	1	2	1																																																																																																																																																																		16
AACAA	4	2	1																																																																																																																																																																				7
AAGAA	15	5		1																																																																																																																																																																			21
AAGAG							1																																																																																																																																																																1
AAGGA	1																																																																																																																																																																						1
AATAA	133	46	4																																																																																																																																																																				183
AATAC	6	2																																																																																																																																																																					8
AATAG	1																																																																																																																																																																						1
AATAT	81	21	10	1	2	1	2		2		1	1		2	1	2				1																																																																																																																																																			128
AATGA	1	1																																																																																																																																																																					2
AATGT	1																																																																																																																																																																						1
AATTA	5	1		1																																																																																																																																																																			7
AATTG			1																																																																																																																																																																				1
AATTT	4	1																																																																																																																																																																					5
ACAAA	3																																																																																																																																																																						3
ACAAT	2																																																																																																																																																																						2
AGAAA	12	5	1																																																																																																																																																																				18
AGAAC	1																																																																																																																																																																						1
AGAAT	3																																																																																																																																																																						3
ATAAA	83	19	11	4	2		1				1																																																																																																																																																												121
ATAAC	2					1																																																																																																																																																																	3
ATAAT	56	24	14	3	1	2	1	2			4			1		1				1	1																																																																																																																																																		111
ATACA	3	1																																																																																																																																																																					4
ATAGA	2																																																																																																																																																																						2
ATATA	275	62	26	6	1	1		3	3		3	2		1	1			2																																																																																																																																																					386
ATATC	4	2	1																																																																																																																																																																				7
ATATG	7																																																																																																																																																																						7
ATATT	52	25	10	3	2							1	1	1		1			1			1																																																																																																																																																	98
ATCAA	1																																																																																																																																																																						1
ATCTT	1																																																																																																																																																																						1
ATGAA	1		1																																																																																																																																																																				2
ATGAT	2																																																																																																																																																																						2
ATGCC	1																																																																																																																																																																						1
ATGTA		1																																																																																																																																																																					1
ATTAA	1																																																																																																																																																																						1
ATTAC	2																																																																																																																																																																						2
ATTAT	46	8	6	1	1		1	1				1										1					1																																																																																																																																												67
ATTCA		1																																																																																																																																																																					1
ATTCT	1																																																																																																																																																																						1
ATTTA	4	1	1	1																																																																																																																																																																			7
ATTTC	9	3																																																																																																																																																																					12
ATTTG	2			1																																																																																																																																																																			3
ATTTT	93	35	17	3					1																																																																																																																																																														149
CAAAA	8																																																																																																																																																																						8
CAAAT		2																																																																																																																																																																					2
CACAT	1																																																																																																																																																																						1
CATAA	1																																																																																																																																																																						1
CATAT	1																																																																																																																																																																						1
CATTT	1																																																																																																																																																																						1
CTATT	1																																																																																																																																																																						1
CTTTC	1	1																																																																																																																																																																					2
CTTTT	7	5	1					1																																																																																																																																																															14
GAAAA	21	4	3																																																																																																																																																																				28
GAAAC	1																																																																																																																																																																						1
GAAAT	6																																																																																																																																																																						6
GAATT		1																																																																																																																																																																					1
GATAT	1			1																																																																																																																																																																			2
GATTT		1																																																																																																																																																																					1
GCCAA	1																																																																																																																																																																						1
GTAAT	1																																																																																																																																																																						1
GTATA	1																																																																																																																																																																						1
GTATT		1																																																																																																																																																																					1
GTTTT	3																																																																																																																																																																						3
TAAAA	59	26	7		1																																																																																																																																																																		93
TAAAT	7																																																																																																																																																																						7
TAATA	31	10	6	1		1																																																																																																																																																																	49
TAATG	1																																																																																																																																																																						1
TAATT	5		1																																																																																																																																																																				6
TACAA	1																																																																																																																																																																						1
TACTT	1																																																																																																																																																																						1
TATAA	35	7	4	2		1						1																																																																																																																																																											50
TATAC	1																																																																																																																																																																						1
TATAT	267	55	28	6	5	2	3				1	3		2																																																																																																																																																									372
TATCA	2																																																																																																																																																																						2
TATCT	1																																																																																																																																																																						1
TATTA	59	25	13	9	2		1	2	2	1			1	1		1	1			1		2																																																																																																																																																	121
TATTC	3																																																																																																																																																																						3
TATTG	4																																																																																																																																																																						4
TATTT	124	45	19	4	1	1	1																																																																																																																																																																195
TCAAA	2	1																																																																																																																																																																					3
TCATA				1																																																																																																																																																																			1
TCATT	3																																																																																																																																																																						3
TCCTT	1																																																																																																																																																																						1
TCTTA		1																																																																																																																																																																					1
TCTTT	10	1																																																																																																																																																																					11
TGAAA	1																																																																																																																																																																						1
TGATA	3	1																																																																																																																																																																					4
TGATT	1																																																																																																																																																																						1
TGTAT	4	1																																																																																																																																																																					5
TGTCA		1																																																																																																																																																																					1
TGTTT	9	3	1																																																																																																																																																																				13
TTAAA	7		1																																																																																																																																																																				8
TTAAT	4	1																																																																																																																																																																					5
TTATA	49	18	5	4	4	3		1			1	3		1	1						1		1																																																																																																																																																92
TTATC		1																																																																																																																																																																					1
TTATG	2		1																																																																																																																																																																				3
TTATT	169	60	26	5	3																																																																																																																																																																		263
TTCAT	1																																																																																																																																																																						1
TTCTT	19	2	4																																																																																																																																																																				25
TTGAT			1																																																																																																																																																																				1
TTGTA	1																																																																																																																																																																						1
TTGTT	4			1																																																																																																																																																																			5
TTTAA	4	3						1																																																																																																																																																															8
TTTAT	193	65	18	2		1			1	1			1																																																																																																																																																										282
TTTCA	4	2																																																																																																																																																																					6
TTTCC	1	1																																																																																																																																																																					2
TTTCT	19	6	3	1	3																																																																																																																																																																		32
TTTGA	3	6																																																																																																																																																																					9
TTTGT	10	1																																																																																																																																																																					11
TTTTA	219	97	39	10	4	1	2	2																																																																																																																																																															374
TTTTC	51	12	7	1	2																																																																																																																																																																		73
TTTTG	19	2	3	1	1																																																																																																																																																																		26
AAAAAC	6	3																																																																																																																																																																					9
AAAAAG	42	11	1	1	2	1																																																																																																																																																																	58
AAAAAT	73	27	5	1																																																																																																																																																																			106
AAAACA	4																																																																																																																																																																						4
AAAACC		1																																																																																																																																																																					1
AAAACT		1																																																																																																																																																																					1
AAAAGA	8	4																																																																																																																																																																					12
AAAAGG	1																																																																																																																																																																						1
AAAAGT		1																																																																																																																																																																					1
AAAATA	25	9	1	1																																																																																																																																																																			36
AAAATC	1																																																																																																																																																																						1
AAAATG	1																																																																																																																																																																						1
AAAATT	3	1																																																																																																																																																																					4
AAACAA				1																																																																																																																																																																			1
AAACAC	1																																																																																																																																																																						1
AAACAG	1																																																																																																																																																																						1
AAACAT		2																																																																																																																																																																					2
AAAGAA	18	2	1	1																																																																																																																																																																			22
AAAGAG				1																																																																																																																																																																			1
AAAGAT	2	3																																																																																																																																																																					5
AAAGGA	1																																																																																																																																																																						1
AAATAA	29	3	1																																																																																																																																																																				33
AAATAC	5	2		1																																																																																																																																																																			8
AAATAG				1																																																																																																																																																																			1
AAATAT	30	7	4	1	2	1																																																																																																																																																																	45
AAATGA	2		1																																																																																																																																																																				3
AAATGC	1																																																																																																																																																																						1
AAATGG	1	2																																																																																																																																																																					3
AAATGT	2	1	1	1	1																																																																																																																																																																		6
AAATTT	2																																																																																																																																																																						2
AACAAA			1	1																																																																																																																																																																			2
AACAAT	3	1			1																																																																																																																																																																		5
AACACA	1	1																																																																																																																																																																					2
AACAGC		1																																																																																																																																																																					1
AACATA	1																																																																																																																																																																						1
AACGAA	1																																																																																																																																																																						1
AAGAAA	6	3	1	1		1																																																																																																																																																																	12
AAGAAT	2																																																																																																																																																																						2
AAGAGA		1																																																																																																																																																																					1
AAGAGC	1																																																																																																																																																																						1
AAGATA	3	1	1																																																																																																																																																																				5
AAGGAA	4																																																																																																																																																																						4
AAGGAC		1																																																																																																																																																																					1
AATAAA	14	1																																																																																																																																																																					15
AATAAC	4	1	2	1																																																																																																																																																																			8
AATAAG	1																																																																																																																																																																						1
AATACA	1	1																																																																																																																																																																					2
AATAGG	1																																																																																																																																																																						1
AATAGT	3																																																																																																																																																																						3
AATATA	30	6	1				1																																																																																																																																																																38
AATATG	1																																																																																																																																																																						1
AATATT	2	1																																																																																																																																																																					3
AATGAA	1		1																																																																																																																																																																				2
AATGAG	1																																																																																																																																																																						1
AATGGT	1																																																																																																																																																																						1
AATGTA	1																																																																																																																																																																						1
AATGTC	1																																																																																																																																																																						1
AATGTT	1																																																																																																																																																																						1
AATTAC	1	1																																																																																																																																																																					2
AATTAT	4	1																																																																																																																																																																					5
AATTCT		1																																																																																																																																																																					1
AATTTT	2	1																																																																																																																																																																					3
ACAAAC	3	1																																																																																																																																																																					4
ACAAAT		2																																																																																																																																																																					2
ACAAGA	1																																																																																																																																																																						1
ACAAGG			2																																																																																																																																																																				2
ACAAGT		1																																																																																																																																																																					1
ACAATA	3																																																																																																																																																																						3
ACATAA		1																																																																																																																																																																					1
ACATAT	4	1																																																																																																																																																																					5
ACCATC	1																																																																																																																																																																						1
ACCTAT	1																																																																																																																																																																						1
ACGATG	1	1																																																																																																																																																																					2
ACGTAA		1																																																																																																																																																																					1
ACGTTG	1																																																																																																																																																																						1
ACTATG	1																																																																																																																																																																						1
ACTATT	3	2	1																																																																																																																																																																				6
AGAAAA	5		1	2																																																																																																																																																																			8
AGAACC		1																																																																																																																																																																					1
AGAGAC		1																																																																																																																																																																					1
AGATAA	3																																																																																																																																																																						3
AGATAT	2																																																																																																																																																																						2
AGATGA		1																																																																																																																																																																					1
AGGATA	2																																																																																																																																																																						2
AGGATG	1																																																																																																																																																																						1
AGGTGT	1																																																																																																																																																																						1
AGTAAT	2	3																																																																																																																																																																					5
ATAAAA	22	3			1																																																																																																																																																																		26
ATAAAC	3		1																																																																																																																																																																				4
ATAAAG	3	1																																																																																																																																																																					4
ATAAAT	69	23	3	4	3	2	2		1		1																																																																																																																																																												108
ATAACA	4																																																																																																																																																																						4
ATAATC	1																																																																																																																																																																						1
ATAATG	5	1																																																																																																																																																																					6
ATAATT	10																																																																																																																																																																						10
ATACAT	5	1	1																																																																																																																																																																				7
ATAGAT	1																																																																																																																																																																						1
ATAGTA	3																																																																																																																																																																						3
ATATAA	51	13	1	2	1		1																																																																																																																																																																69
ATATAC	13	1	1																																																																																																																																																																				15
ATATAG	5	1																																																																																																																																																																					6
ATATCC		1																																																																																																																																																																					1
ATATGA	1																																																																																																																																																																						1
ATATGT	4	2																																																																																																																																																																					6
ATATTA	4	1	1																																																																																																																																																																				6
ATATTC	1																																																																																																																																																																						1
ATATTT	19	7	5	1																																																																																																																																																																			32
ATCAAA	2																																																																																																																																																																						2
ATCACC	1																																																																																																																																																																						1
ATCATA	1																																																																																																																																																																						1
ATCATT	7	1	1		1																																																																																																																																																																		10
ATCCTT	1																																																																																																																																																																						1
ATCGTT	1																																																																																																																																																																						1
ATCTAT	1																																																																																																																																																																						1
ATCTTC	1																																																																																																																																																																						1
ATGAAA		2	1																																																																																																																																																																				3
ATGAAC	1																																																																																																																																																																						1
ATGAAG	4																																																																																																																																																																						4
ATGAAT	1																																																																																																																																																																						1
ATGATA	3																																																																																																																																																																						3
ATGGAC	1																																																																																																																																																																						1
ATGGTG	1																																																																																																																																																																						1
ATGTAA	1																																																																																																																																																																						1
ATGTAT	3																																																																																																																																																																						3
ATGTTA	1	1	1				1																																																																																																																																																																4
ATGTTC	2	1																																																																																																																																																																					3
ATGTTG	1																																																																																																																																																																						1
ATGTTT		1																																																																																																																																																																					1
ATTAAA	1	1																																																																																																																																																																					2
ATTATA	6	1																																																																																																																																																																					7
ATTATC	10	1																																																																																																																																																																					11
ATTATG	3																																																																																																																																																																						3
ATTCAC			1																																																																																																																																																																				1
ATTGTA	1																																																																																																																																																																						1
ATTGTT	1																																																																																																																																																																						1
ATTTAC	1	2																																																																																																																																																																					3
ATTTAT	19	5	4	2					1	1																																																																																																																																																													32
ATTTGT	1																																																																																																																																																																						1
ATTTTA	3	2																																																																																																																																																																					5
ATTTTC	5	2	1																																																																																																																																																																				8
ATTTTG	1				1																																																																																																																																																																		2
ATTTTT	17	8	3																																																																																																																																																																				28
CAAATA	3																																																																																																																																																																						3
CAACAT	1		1																																																																																																																																																																				2
CAATGT		1																																																																																																																																																																					1
CACAAA		1																																																																																																																																																																					1
CACCTT	1																																																																																																																																																																						1
CATAAA	1																																																																																																																																																																						1
CATATA					1																																																																																																																																																																		1
CATATT	1																																																																																																																																																																						1
CATCAC		2																																																																																																																																																																					2
CATGAA	1																																																																																																																																																																						1
CATGTT		1																																																																																																																																																																					1
CATTAC		1																																																																																																																																																																					1
CATTAT	1																																																																																																																																																																						1
CATTTT	1																																																																																																																																																																						1
CCATTC	1																																																																																																																																																																						1
CCTCTT	1																																																																																																																																																																						1
CCTTTA	1																																																																																																																																																																						1
CGAACA		2																																																																																																																																																																					2
CGAGAA	1																																																																																																																																																																						1
CTAATA	1																																																																																																																																																																						1
CTATAT	1																																																																																																																																																																						1
CTATTA	1																																																																																																																																																																						1
CTGGTC	1																																																																																																																																																																						1
CTTATC	1																																																																																																																																																																						1
CTTATT	1																																																																																																																																																																						1
CTTCAT	1																																																																																																																																																																						1
CTTCCT	3																																																																																																																																																																						3
CTTCTC	4	1																																																																																																																																																																					5
CTTTAT		1																																																																																																																																																																					1
CTTTTA	2																																																																																																																																																																						2
CTTTTG	1																																																																																																																																																																						1
CTTTTT	7																																																																																																																																																																						7
GAAAAA	14	7																																																																																																																																																																					21
GAAAAC	1																																																																																																																																																																						1
GAAAAG	4																																																																																																																																																																						4
GAAAAT	3	1																																																																																																																																																																					4
GAAAGT	1																																																																																																																																																																						1
GAACAT		1																																																																																																																																																																					1
GAACTA	1																																																																																																																																																																						1
GAAGAG	5																																																																																																																																																																						5
GAAGAT	1	1																																																																																																																																																																					2
GAATAT	1	1																																																																																																																																																																					2
GACTAT			1																																																																																																																																																																				1
GATAAA	1																																																																																																																																																																						1
GATGAA	2				1																																																																																																																																																																		3
GATGAC	1	1																																																																																																																																																																					2
GATGGC	1																																																																																																																																																																						1
GATTCT	1																																																																																																																																																																						1
GCATTT	1																																																																																																																																																																						1
GGAAAA		1																																																																																																																																																																					1
GGACAT			1																																																																																																																																																																				1
GTAAAA	2																																																																																																																																																																						2
GTAATA		2																																																																																																																																																																					2
GTATAT	1	1																																																																																																																																																																					2
GTCATC	1																																																																																																																																																																						1
GTCCAT	1																																																																																																																																																																						1
GTGATG	1																																																																																																																																																																						1
GTTAAA	1																																																																																																																																																																						1
GTTAGT		1																																																																																																																																																																					1
GTTATC		1																																																																																																																																																																					1
GTTCAT	1		1																																																																																																																																																																				2
GTTCGT		1																																																																																																																																																																					1
GTTTTC	1																																																																																																																																																																						1
GTTTTG		1																																																																																																																																																																					1
TAAAAA	20	1	1																																																																																																																																																																				22
TAAAAT	1																																																																																																																																																																						1
TAAATA	12	7		1	2																																																																																																																																																																		22
TAAATC	1	1																																																																																																																																																																					2
TAAATG	1																																																																																																																																																																						1
TAAATT	1	1																																																																																																																																																																					2
TAAGAA	1																																																																																																																																																																						1
TAATAC	1																																																																																																																																																																						1
TAATAG	8	5	1				1																																																																																																																																																																15
TAATAT	3	1																																																																																																																																																																					4
TAATGA	1																																																																																																																																																																						1
TAATTA	6	2																																																																																																																																																																					8
TAATTT	1																																																																																																																																																																						1
TACAAA	1																																																																																																																																																																						1
TACATA	1	1																																																																																																																																																																					2
TACTAT	4	4																																																																																																																																																																					8
TAGATA		1																																																																																																																																																																					1
TATAAA	15	4																																																																																																																																																																					19
TATAAT	8	1																																																																																																																																																																					9
TATACA	2	2																																																																																																																																																																					4
TATAGA		1																																																																																																																																																																					1
TATATC	3	1																																																																																																																																																																					4
TATATG	9	4																																																																																																																																																																					13
TATATT	66	14	4	2			2																																																																																																																																																																88
TATCAT			1																																																																																																																																																																				1
TATCTA	3																																																																																																																																																																						3
TATGAA	1																																																																																																																																																																						1
TATGTA	1																																																																																																																																																																						1
TATGTC		1																																																																																																																																																																					1
TATGTG	1																																																																																																																																																																						1
TATGTT	1		2					1																																																																																																																																																															4
TATTAA	4	1																																																																																																																																																																					5
TATTAC	6																																																																																																																																																																						6
TATTCA	1																																																																																																																																																																						1
TATTGT		1	1	1																																																																																																																																																																			3
TATTTA	64	16	3			1																																																																																																																																																																	84
TATTTC	1	1																																																																																																																																																																					2
TATTTG	1																																																																																																																																																																						1
TATTTT	25	10	2																																																																																																																																																																				37
TCAAAA	3																																																																																																																																																																						3
TCATAA	1																																																																																																																																																																						1
TCATAT	2																																																																																																																																																																						2
TCATCG		1																																																																																																																																																																					1
TCATTG	1																																																																																																																																																																						1
TCATTT		1																																																																																																																																																																					1
TCCTCA	1																																																																																																																																																																						1
TCCTTT	1																																																																																																																																																																						1
TCTACC		1																																																																																																																																																																					1
TCTCTA	2																																																																																																																																																																						2
TCTCTT			1																																																																																																																																																																				1
TCTGGA	1																																																																																																																																																																						1
TCTTCA	3																																																																																																																																																																						3
TCTTCC	2																																																																																																																																																																						2
TCTTGT	1	1																																																																																																																																																																					2
TCTTTA	1																																																																																																																																																																						1
TCTTTT	8	2																																																																																																																																																																					10
TGAAAA	1																																																																																																																																																																						1
TGAACA	1																																																																																																																																																																						1
TGACGA	1																																																																																																																																																																						1
TGAGGA	1																																																																																																																																																																						1
TGATAA	2	1																																																																																																																																																																					3
TGATGG	2	1																																																																																																																																																																					3
TGATTG	1																																																																																																																																																																						1
TGCTCT	1																																																																																																																																																																						1
TGGTAG		1																																																																																																																																																																					1
TGGTGA	1																																																																																																																																																																						1
TGTAAA	1																																																																																																																																																																						1
TGTACA	1																																																																																																																																																																						1
TGTATA	3																																																																																																																																																																						3
TGTATG		1																																																																																																																																																																					1
TGTATT	2																																																																																																																																																																						2
TGTCTT	1																																																																																																																																																																						1
TGTGTA		2																																																																																																																																																																					2
TGTGTT		1																																																																																																																																																																					1
TGTTAA	1																																																																																																																																																																						1
TGTTAT	1																																																																																																																																																																						1
TGTTCA					1																																																																																																																																																																		1
TGTTGC	1																																																																																																																																																																						1
TGTTTA	3																																																																																																																																																																						3
TGTTTT	2	1																																																																																																																																																																					3
TTAAAA	1																																																																																																																																																																						1
TTAAAT	1																																																																																																																																																																						1
TTAATA	1																																																																																																																																																																						1
TTAATG	1																																																																																																																																																																						1
TTAATT	1																																																																																																																																																																						1
TTACAT		1																																																																																																																																																																					1
TTACTA	1																																																																																																																																																																						1
TTATAA	2																																																																																																																																																																						2
TTATAC	1																																																																																																																																																																						1
TTATAT	19	7	1	1	1	1																																																																																																																																																																	30
TTATCA	1	1																																																																																																																																																																					2
TTATCT		2		1																																																																																																																																																																			3
TTATGA		1																																																																																																																																																																					1
TTATTC	3																																																																																																																																																																						3
TTATTG	15	2																																																																																																																																																																					17
TTATTT	27	2	1																																																																																																																																																																				30
TTCATC	2																																																																																																																																																																						2
TTCATG	2																																																																																																																																																																						2
TTCCTT			1																																																																																																																																																																				1
TTCGTA	1																																																																																																																																																																						1
TTCTCT	1	1																																																																																																																																																																					2
TTCTGT	1																																																																																																																																																																						1
TTCTTT	9	1			1																																																																																																																																																																		11
TTGACT	4																																																																																																																																																																						4
TTGATT	1																																																																																																																																																																						1
TTGTAC	1																																																																																																																																																																						1
TTGTTA	1	1																																																																																																																																																																					2
TTGTTT	1	2	1																																																																																																																																																																				4
TTTAAA	1																																																																																																																																																																						1
TTTAAC	1																																																																																																																																																																						1
TTTAAT	1																																																																																																																																																																						1
TTTATA	14	3		1			1																																																																																																																																																																19
TTTATC	1																																																																																																																																																																						1
TTTATG	3	3	1																																																																																																																																																																				7
TTTATT	19	14	3																																																																																																																																																																				36
TTTCCA		1																																																																																																																																																																					1
TTTCTA	2																																																																																																																																																																						2
TTTCTC	1																																																																																																																																																																						1
TTTCTT	12	7																																																																																																																																																																					19
TTTGTA	2	1																																																																																																																																																																					3
TTTGTG	1		1																																																																																																																																																																				2
TTTGTT		1																																																																																																																																																																					1
TTTTAA	8	1																																																																																																																																																																					9
TTTTAC	1																																																																																																																																																																						1
TTTTAT	25	5	1																																																																																																																																																																				31
TTTTCA	2																																																																																																																																																																						2
TTTTCC	5	1																																																																																																																																																																					6
TTTTCG	2																																																																																																																																																																						2
TTTTCT	8	1			1																																																																																																																																																																		10
TTTTGA	2	1																																																																																																																																																																					3
TTTTGT	2		1																																																																																																																																																																				3
TTTTTA	53	17	5	1																																																																																																																																																																			76
TTTTTC	31	18	3	1																																																																																																																																																																			53
TTTTTG	4	2																																																																																																																																																																					6

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1176	910	815	739	655	539	545	501	415	383	333	281	204	183	136	160	145	148	142	125	197	96	100	65	61	46	57	46	38	30	39	22	32	39	28	20	18	15	24	17	11	20	16	10	12	13	9	16	7	6	3	3	6	7	6	6	8	5	6	6	3	5	4	5	2		2	3	1	4		4	1		2	2	2	3		3	1	3	2	3	2	1	1	1	2		3	1	2	1		1				1		1							1											1		1	1							2																			1	9780
AC/GT	-	-	-	58	40	18	8	4	2																																																																																																																																																														130
AG/CT	-	-	-	15	10	5	5	5	1	1																																																																																																																																																													42
AT/AT	-	-	-	5012	3331	2943	2951	2836	2653	2481	2120	1818	1578	1277	1059	870	838	664	541	420	343	246	170	109	91	65	32	22	10	12	6	9	2	2	1		2																																																																																																																																		34514
CG/CG	-	-	-	1																																																																																																																																																																			1
AAC/GTT	-	-	73	31	22	11	11	4	4	1	2	2	2	1		2																																																																																																																																																							166
AAG/CTT	-	-	77	53	23	15	7	2	1																																																																																																																																																														178
AAT/ATT	-	-	1849	1086	913	711	517	336	197	138	96	70	53	33	16	9	6	7	8	2	2		2	1			2													1	1																																																																																																																														6056
ACC/GGT	-	-	4		2																																																																																																																																																																		6
ACG/CGT	-	-	2		1																																																																																																																																																																		3
ACT/AGT	-	-	54	29	14	3	5	4	2		1						1																																																																																																																																																						113
AGG/CCT	-	-	6	3	1																																																																																																																																																																		10
ATC/ATG	-	-	163	83	32	16	9	1	2	1	2	1	1	1			1																																																																																																																																																						313
AAAC/GTTT	-	38	9	9	3	3	1	2		1					2																																																																																																																																																								68
AAAG/CTTT	-	51	15	8	3	3									1																																																																																																																																																								81
AAAT/ATTT	-	2104	1253	603	268	98	42	28	13	5	4	1					1																																																																																																																																																						4420
AAGG/CCTT	-	2																																																																																																																																																																					2
AATC/ATTG	-	1	1	1										1																																																																																																																																																									4
AATG/ATTC	-	20	6		2	1	1																																																																																																																																																																30
AATT/AATT	-	19	6	1		2	1																																																																																																																																																																29
ACAT/ATGT	-	203	93	41	22	10	10	5	6	2	5	1	1			1				1																																																																																																																																																			401
ACCT/AGGT	-	2																																																																																																																																																																					2
ACTC/AGTG	-																			1																																																																																																																																																			1
AGAT/ATCT	-	4	1																																																																																																																																																																				5
AGCT/AGCT	-	2																																																																																																																																																																					2
AAAAC/GTTTT	80	13	8	2	1																																																																																																																																																																		104
AAAAG/CTTTT	232	58	25	6	5			1							1																																																																																																																																																								328
AAAAT/ATTTT	1550	589	233	52	17	6	6	4	2	1	1		1									1																																																																																																																																																	2463
AAACG/CGTTT	1																																																																																																																																																																						1
AAAGG/CCTTT	5	3																																																																																																																																																																					8
AAAGT/ACTTT	1																																																																																																																																																																						1
AAATC/ATTTG	13	10	2	1																																																																																																																																																																			26
AAATG/ATTTC	37	7	1																																																																																																																																																																				45
AAATT/AATTT	50	10	4	4	1			1																																																																																																																																																															70
AACAG/CTGTT	1																																																																																																																																																																						1
AACAT/ATGTT	5		1			1																																																																																																																																																																	7
AAGAG/CTCTT							1																																																																																																																																																																1
AAGAT/ATCTT	2	2																																																																																																																																																																					4
AAGCC/CTTGG	1																																																																																																																																																																						1
AATAC/ATTGT	21	5																																																																																																																																																																					26
AATAG/ATTCT	11																																																																																																																																																																						11
AATAT/ATATT	951	255	122	36	18	11	8	9	7	1	10	12	2	9	3	5	1	2	1	3	2	4	1				1																																																																																																																																												1474
AATGT/ACATT	5	1																																																																																																																																																																					6
AATTC/AATTG		2	1																																																																																																																																																																				3
ACATC/ATGTG	1																																																																																																																																																																						1
ACATG/ATGTC		1																																																																																																																																																																					1
ACTAT/AGTAT	2																																																																																																																																																																						2
ATATC/ATATG	20	3	1	2																																																																																																																																																																			26
ATGCC/ATGGC	1																																																																																																																																																																						1
AAAAAC/GTTTTT	19	9	3	2																																																																																																																																																																			33
AAAAAG/CTTTTT	168	56	7	6	4	2																																																																																																																																																																	243
AAAAAT/ATTTTT	349	100	23	3	1																																																																																																																																																																		476
AAAACC/GGTTTT		2																																																																																																																																																																					2
AAAACG/CGTTTT	5																																																																																																																																																																						5
AAAACT/AGTTTT		1																																																																																																																																																																					1
AAAAGC/CTTTTG	1																																																																																																																																																																						1
AAAAGG/CCTTTT	16	2	1																																																																																																																																																																				19
AAAAGT/ACTTTT	5	1																																																																																																																																																																					6
AAAATC/ATTTTG	10	1			1																																																																																																																																																																		12
AAAATG/ATTTTC	16	6	4																																																																																																																																																																				26
AAAATT/AATTTT	22	6																																																																																																																																																																					28
AAACAC/GTGTTT	6	4	1																																																																																																																																																																				11
AAACAG/CTGTTT	2																																																																																																																																																																						2
AAACAT/ATGTTT	12	7	4					1																																																																																																																																																															24
AAACGT/ACGTTT		1																																																																																																																																																																					1
AAAGAC/CTTTGT	1																																																																																																																																																																						1
AAAGAG/CTCTTT	2	2	1	1																																																																																																																																																																			6
AAAGAT/ATCTTT	14	8	1	1																																																																																																																																																																			24
AAAGGT/ACCTTT	1																																																																																																																																																																						1
AAAGTC/ACTTTG	4																																																																																																																																																																						4
AAAGTG/ACTTTC	1																																																																																																																																																																						1
AAAGTT/AACTTT	2																																																																																																																																																																						2
AAATAC/ATTTGT	16	6		1																																																																																																																																																																			23
AAATAG/ATTTCT	3	1		1																																																																																																																																																																			5
AAATAT/ATATTT	408	112	26	15	9	5	7		2	1	1																																																																																																																																																												586
AAATCT/AGATTT	1	1																																																																																																																																																																					2
AAATGC/ATTTGC	2																																																																																																																																																																						2
AAATGG/ATTTCC	1	3																																																																																																																																																																					4
AAATGT/ACATTT	7	4	1	1	1																																																																																																																																																																		14
AAATTT/AAATTT	5	1																																																																																																																																																																					6
AACAAG/CTTGTT	2	1																																																																																																																																																																					3
AACAAT/ATTGTT	32	6	3	2	1																																																																																																																																																																		44
AACACG/CGTGTT		3																																																																																																																																																																					3
AACACT/AGTGTT		1																																																																																																																																																																					1
AACAGC/CTGTTG	1	1																																																																																																																																																																					2
AACATC/ATGTTG	2		1																																																																																																																																																																				3
AACATG/ATGTTC	8	3	1		1																																																																																																																																																																		13
AACATT/AATGTT	4	1	1				1																																																																																																																																																																7
AACCAG/CTGGTT		1																																																																																																																																																																					1
AACGAG/CGTTCT	1																																																																																																																																																																						1
AACGAT/ATCGTT	1	1																																																																																																																																																																					2
AACGTC/ACGTTG	1																																																																																																																																																																						1
AACTAG/AGTTCT	1																																																																																																																																																																						1
AAGAAT/ATTCTT	8																																																																																																																																																																						8
AAGAGC/CTCTTG	2																																																																																																																																																																						2
AAGAGG/CCTCTT	11																																																																																																																																																																						11
AAGATG/ATCTTC	14	2			1																																																																																																																																																																		17
AAGGAC/CCTTGT		1	2																																																																																																																																																																				3
AAGGAG/CCTTCT	4	1																																																																																																																																																																					5
AAGGAT/ATCCTT	4																																																																																																																																																																						4
AAGGTG/ACCTTC	1																																																																																																																																																																						1
AAGTAC/ACTTGT	1	1																																																																																																																																																																					2
AAGTAT/ACTTAT	1																																																																																																																																																																						1
AATACG/ATTCGT	1																																																																																																																																																																						1
AATACT/AGTATT	2																																																																																																																																																																						2
AATAGG/ATTCCT	1																																																																																																																																																																						1
AATAGT/ACTATT	31	16	2				1																																																																																																																																																																50
AATATG/ATATTC	10	1																																																																																																																																																																					11
AATATT/AATATT	14	4	1																																																																																																																																																																				19
AATCAC/ATTGTG	1																																																																																																																																																																						1
AATCAG/ATTCTG	1																																																																																																																																																																						1
AATCAT/ATGATT	6	1																																																																																																																																																																					7
AATGAC/ATTGTC	1																																																																																																																																																																						1
AATGAG/ATTCTC	1																																																																																																																																																																						1
AATGAT/ATCATT	30	5	2		1																																																																																																																																																																		38
AATGGG/ATTCCC	1																																																																																																																																																																						1
AATGGT/ACCATT	1	1																																																																																																																																																																					2
AATGTC/ACATTG	1	1																																																																																																																																																																					2
AATGTG/ACATTC			1																																																																																																																																																																				1
AATTAC/AATTGT	2	1																																																																																																																																																																					3
AATTAG/AATTCT		1																																																																																																																																																																					1
AATTAT/AATTAT	36	5																																																																																																																																																																					41
ACACAT/ATGTGT	1	3																																																																																																																																																																					4
ACACCT/AGGTGT	1																																																																																																																																																																						1
ACAGAG/CTCTGT		1																																																																																																																																																																					1
ACATAG/ATGTCT		1																																																																																																																																																																					1
ACATAT/ATATGT	46	13	2		1																																																																																																																																																																		62
ACATGG/ATGTCC	2		1																																																																																																																																																																				3
ACATGT/ACATGT	1																																																																																																																																																																						1
ACCACT/AGTGGT		1																																																																																																																																																																					1
ACCAGG/CCTGGT	1																																																																																																																																																																						1
ACCATC/ATGGTG	7	3																																																																																																																																																																					10
ACCTAT/AGGTAT	1																																																																																																																																																																						1
ACCTCT/AGAGGT		1																																																																																																																																																																					1
ACGATG/ATCGTC	4	3																																																																																																																																																																					7
ACTATG/AGTCAT	1		1																																																																																																																																																																				2
AGAGAT/ATCTCT	2																																																																																																																																																																						2
AGATAT/ATATCT	16	4																																																																																																																																																																					20
AGATCC/ATCTGG	1																																																																																																																																																																						1
AGGATG/ATCCTC	3																																																																																																																																																																						3
ATATCC/ATATGG		1																																																																																																																																																																					1
ATCGCC/ATGGCG	1																																																																																																																																																																						1
