Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-28/megassr/results/hub_GCF_001579135.1/fasta/hub_GCF_001579135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              190
Total size of examined sequences (bp):           2548002
Total number of identified SSRs:                 5
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	4
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AAAAC	1																1
AGCAC								1									1
CTCTG																1	1
GCTGT									1								1
GCTTCT	1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AAAAC/GTTTT	1																1
ACAGC/CTGTG								1	1								2
AGAGC/CTCTG																1	1
AAGCAG/CTGCTT	1																1
