Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-17/megassr/results/hub_GCF_001564435.1/fasta/hub_GCF_001564435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1188848
Total number of identified SSRs:                 21
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	2
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AT	-	-	-										1		1		1	3
TA	-	-	-					1	1	1	1							4
CAA	-	-	1															1
TTA	-	-					1											1
AAAAT	1																	1
CTTTT	1																	1
TATAT	1																	1
TATTA	1																	1
TATTT	1																	1
TTAAA	1																	1
TTTTA	1																	1
AAAAGA	1																	1
AAAGAT	1																	1
CTTAAA	1																	1
TAATTA	1																	1
TAGAAA	1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AT/AT	-	-	-					1	1	1	1		1		1		1	7
AAC/GTT	-	-	1															1
AAT/ATT	-	-					1											1
AAAAG/CTTTT	1																	1
AAAAT/ATTTT	3																	3
AAATT/AATTT	1																	1
AATAT/ATATT	2																	2
AAAAAG/CTTTTT	1																	1
AAACTT/AAGTTT	1																	1
AAAGAT/ATCTTT	1																	1
AAATAG/ATTTCT	1																	1
AATTAT/AATTAT	1																	1
