Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-31/megassr/results/hub_GCF_001448865.1/fasta/hub_GCF_001448865.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              28
Total size of examined sequences (bp):           4796858
Total number of identified SSRs:                 33
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	11
4	2
5	6
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	5		1			6
GC	-	-	-	1					1
AGC	-	-	1						1
CGC	-	-	1						1
CGG	-	-	3						3
GCA	-	-						1	1
GCG	-	-	3						3
GCT	-	-	1						1
GGC	-	-	1						1
ACCA	-	1							1
TGGC	-	1							1
ATTTC	1								1
ATTTT	1								1
CGCGC	1								1
GCGCC	1								1
GCGGC	1								1
TCGTT	1								1
CCGTCG	1								1
CTGGCG	1								1
GAAGTC	1								1
GCTGGC	1								1
GGAGCT	1								1
GGCGGT	1								1
TGGTCG							1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	6		1			7
AGC/CTG	-	-	2					1	3
CCG/CGG	-	-	8						8
AACC/GGTT	-	1							1
AGCC/CTGG	-	1							1
AAAAT/ATTTT	1								1
AAACG/CGTTT	1								1
AAATG/ATTTC	1								1
CCGCG/CGCGG	3								3
AAGTCG/ACTTCG	1								1
ACCACG/CGTGGT							1		1
ACCGCC/CGGTGG	1								1
ACGGCG/CCGTCG	1								1
AGCGCC/CGCTGG	2								2
AGCTCC/AGCTGG	1								1
