Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-30/megassr/results/hub_GCF_001401315.1/fasta/hub_GCF_001401315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              208
Total size of examined sequences (bp):           6042399
Total number of identified SSRs:                 28
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
4	1
5	4
6	18

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
GC	-	-	-	2				2
TG	-	-	-	2				2
TCA	-	-	1					1
CACT	-	1						1
CAGAA				1				1
CCAGC	1							1
CGCCG	1							1
GTCGG	1							1
ACCGCC	1							1
ACCTGC			1					1
ATGCCG	1							1
ATGGCC	1							1
CCTGCA							1	1
CGTTGT	1							1
GATCCT		1						1
GCAGGA	1							1
GCCTGA	1							1
GCTGGC	1							1
GGCCCA	1							1
GGCCTG	1							1
GGCCTT	1							1
GGTGCG	1							1
GTTGGC	1							1
TATCTG			1					1
TGCAGG				1				1
TGCGGG		1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-	2				2
CG/CG	-	-	-	2				2
ATC/ATG	-	-	1					1
ACTC/AGTG	-	1						1
AACAG/CTGTT				1				1
ACCCG/CGGGT	1							1
AGCCC/CTGGG	1							1
CCGCG/CGCGG	1							1
AACGAC/CGTTGT	1							1
AACGCC/CGTTGG	1							1
AAGGCC/CCTTGG	1							1
ACAGAT/ATCTGT			1					1
ACCCGC/CGGGTG	1	1						2
ACCGCC/CGGTGG	1							1
ACCTGC/AGGTGC			1	1			1	3
AGCAGG/CCTGCT	1							1
AGCCTG/AGGCTC	1							1
AGCGCC/CGCTGG	1							1
AGGATC/ATCCTG		1						1
AGGCCC/CCTGGG	2							2
ATCGGC/ATGCCG	1							1
ATGGCC/ATGGCC	1							1
