Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCF_001294025.1/fasta/hub_GCF_001294025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              96
Total size of examined sequences (bp):           6154614
Total number of identified SSRs:                 37
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	2
5	5
6	26

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG	-	-	-	1												1
GC	-	-	-	1												1
TGG	-	-			1											1
TGT	-	-													1	1
AGCC	-	1														1
TGAG	-				1											1
CACGC	1															1
CAGGC	1															1
CGCGG	1															1
TCTGA	1															1
TGAAT	1															1
ACCTGC						1										1
CACTAT			1													1
CAGCAT	1															1
CCCAAG	1															1
CCGGTT	1															1
CGAGGC	1															1
CGGCAC	1															1
GAGCAC		1														1
GCAGGT	1															1
GCCAAG	1															1
GCCCCT		1														1
GCTAAC	1															1
GCTCGG	1															1
GCTGGA						1										1
GGCAAG	1															1
GGCACC	1															1
GGCGGT	1															1
GGCGTA	1															1
GGTTCT		1														1
TGCAGG		1														1
TGCCAG	1															1
TGCCGT	1															1
TGCGGT	1															1
TGGCTT	1															1
TGGTGT	1															1
TTACGA							1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG/CG	-	-	-	2												2
AAC/GTT	-	-													1	1
ACC/GGT	-	-			1											1
ACTC/AGTG	-				1											1
AGCC/CTGG	-	1														1
AATTC/AATTG	1															1
ACGCC/CGTGG	1															1
AGATC/ATCTG	1															1
AGGCC/CCTGG	1															1
CCGCG/CGCGG	1															1
AAAGCC/CTTTGG	1															1
AACACC/GGTGTT	1															1
AACCAG/CTGGTT		1														1
AACCGC/CGGTTG	1															1
AACCGG/CCGGTT	1															1
AACGCT/AGCGTT	1															1
AACGGC/CCGTTG	1															1
AAGCCC/CTTGGG	1															1
AAGGCC/CCTTGG	1															1
AAGGGC/CCCTTG	1															1
AATCGT/ACGATT							1									1
ACCGCC/CGGTGG	1															1
ACCGGC/CCGGTG	2															2
ACCTGC/AGGTGC	1	1				1										3
ACGAGC/CGTGCT		1														1
ACGCCT/AGGCGT	1															1
ACTATC/AGTGAT			1													1
ACTGGC/AGTGCC	1															1
AGCATC/ATGCTG	1															1
AGCCCG/CGGGCT	1															1
AGCTCC/AGCTGG						1										1
AGGCCG/CCTCGG	1															1
AGGGGC/CCCCTG		1														1
