Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-39/megassr/results/hub_GCF_001269545.1/fasta/hub_GCF_001269545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              44
Total size of examined sequences (bp):           6755578
Total number of identified SSRs:                 46
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
4	1
5	12
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
ACC	-	-						1	1
GTG	-	-	1					1	2
AGCC	-			1					1
AGCCC	1								1
CCAGG	1								1
CCGGT	1								1
CCTGC	1								1
CCTGG	1								1
CGCCG	2								2
GCGCG	1								1
GCGGC	1								1
GCGTG	1								1
GGCGG	1								1
GGGCT	1								1
AAGCCA							1		1
AGATAC	1								1
CACCGC	1								1
CACGAT						1			1
CAGGTC	1								1
CCAATC	1								1
CCAGGC	1								1
CCGCAA	1								1
CCGCAC	1								1
CCGGTG								1	1
CCTGGC	1								1
CGATCT	1								1
CTGGGC	1								1
CTGGTG	1								1
CTTGGT	1								1
GCAGGT					1				1
GCCAAG			1						1
GCCAGG	1								1
GCCCAG	1								1
GGAGCT	1								1
GGCAGC	1								1
GGCCTG	1								1
GGGCCA	1								1
GGGCCT	2								2
GTGGCG	1								1
TCCACC	1								1
TGCTCC			1						1
TGGCTT				1					1
TTGCCC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
ACC/GGT	-	-	1					2	3
AGCC/CTGG	-			1					1
ACCGG/CCGGT	1								1
ACGCC/CGTGG	1								1
AGCCC/CTGGG	2								2
AGGCC/CCTGG	2								2
AGGGC/CCCTG	1								1
CCCCG/CGGGG	1								1
CCGCG/CGCGG	4								4
AAAGCC/CTTTGG				1			1		2
AACCGC/CGGTTG	1								1
AAGACC/CTTGGT	1								1
AAGGCC/CCTTGG			1						1
AAGGGC/CCCTTG	1								1
AATCCC/ATTGGG	1								1
ACAGAT/ATCTGT	1								1
ACCAGC/CTGGTG	1								1
ACCCGC/CGGGTG	1								1
ACCGCC/CGGTGG	2								2
ACCGGC/CCGGTG								1	1
ACCTCC/AGGTGG	1								1
ACCTGC/AGGTGC					1				1
ACCTGG/AGGTCC	1								1
ACGATC/ATCGTG						1			1
AGATCG/ATCTCG	1								1
AGCAGG/CCTGCT			1						1
AGCGGC/CCGCTG	1								1
AGCTCC/AGCTGG	1								1
AGGCCC/CCTGGG	6								6
AGGGCC/CCCTGG	3								3
