Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-28/megassr/results/hub_GCF_001269475.1/fasta/hub_GCF_001269475.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              15
Total size of examined sequences (bp):           6854017
Total number of identified SSRs:                 45
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	11
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
GC	-	-	-	2										2
CCA	-	-											1	1
CCT	-	-										1		1
CCGAC	1													1
CCGGG	1													1
CGCGG	1													1
CGGCG	1													1
GCGCA	1													1
GCGGC	1													1
GGCAC	1													1
GGCGC	1													1
GGGCC	1													1
GTCCC	1													1
TCAAT	1													1
AGCAAA			1											1
AGGCCC	1													1
AGGGCC	1													1
ATGGCC	1													1
CACCAG	1													1
CAGGAA	1													1
CAGGAG								1						1
CCAGGC	1													1
CCAGGG	2													2
CGCTGG	1													1
CGGCTG				1										1
CTGCTC	1													1
CTGGCC	1													1
GCACCG	1													1
GCCAAG	1													1
GCCAGG	1													1
GCCCAG	1													1
GCCCTG	1													1
GCCTGA	1													1
GCGCCG	1													1
GCTCCA		1												1
GCTCCG	1													1
GGCCAG	1													1
GGCCTG	1													1
GGGCAA	1													1
GGGCCA	1													1
GTGATC							1							1
TGTTGC	1													1
TTCCAC	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	2										2
ACC/GGT	-	-											1	1
AGG/CCT	-	-										1		1
AATTC/AATTG	1													1
ACCCG/CGGGT	1													1
ACGGC/CCGTG	1													1
ACGGG/CCCGT	1													1
AGCGC/CGCTG	1													1
CCCGG/CCGGG	2													2
CCGCG/CGCGG	4													4
AAAAGC/CTTTTG			1											1
AACAGC/CTGTTG	1													1
AACAGG/CCTGTT	1													1
AAGGCC/CCTTGG	1													1
AAGGGC/CCCTTG	1													1
AAGTGG/ACTTCC	1													1
ACCAGC/CTGGTG	1													1
ACCGGC/CCGGTG	1													1
ACGATC/ATCGTG							1							1
AGCAGG/CCTGCT	1							1						2
AGCCGC/CGGCTG				1										1
AGCCGG/CCGGCT	1													1
AGCCTG/AGGCTC	1													1
AGCGCC/CGCTGG	1													1
AGCTCC/AGCTGG		1												1
AGGCCC/CCTGGG	4													4
AGGGCC/CCCTGG	8													8
ATGGCC/ATGGCC	1													1
CCGGCG/CCGGCG	1													1
