Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-27/megassr/results/hub_GCF_001110725.1/fasta/hub_GCF_001110725.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              55
Total size of examined sequences (bp):           4428945
Total number of identified SSRs:                 29
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
4	2
5	9
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
GC	-	-	-	1					1
ACC	-	-	1						1
CAC	-	-	1						1
CTG	-	-	1						1
GCA	-	-						1	1
GGT	-	-	1						1
TTCC	-			1					1
TTTG	-			1					1
CAGCG	1								1
CCGTG		1							1
CGGCG	1								1
GAAGG			1						1
GCATG	1								1
GCGCA	1								1
TGAAC		1							1
TTAAA		1							1
TTCAG					1				1
ACCAAT	1								1
AGGGAG	1								1
ATCAAC			1						1
CAGCAC			1						1
CAGTAA	1								1
CTATAA				1					1
CTTCCA		1							1
GAATAT		1							1
GAATGG		1							1
GCCAGG	1								1
TGGTAT			1						1
TTTTGA	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	1					1
ACC/GGT	-	-	3						3
AGC/CTG	-	-	1					1	2
AAAC/GTTT	-			1					1
AAGG/CCTT	-			1					1
AAATT/AATTT		1							1
AACTG/AGTTC		1			1				2
AAGGG/CCCTT			1						1
ACGGC/CCGTG		1							1
AGCGC/CGCTG	2								2
ATGCC/ATGGC	1								1
CCGCG/CGCGG	1								1
AAAATC/ATTTTG	1								1
AACAGT/ACTGTT	1								1
AACATC/ATGTTG			1						1
AACTAT/AGTTAT				1					1
AAGTGG/ACTTCC		1							1
AATACC/ATTGGT	1		1						2
AATATG/ATATTC		1							1
AATGGG/ATTCCC		1							1
ACCAGC/CTGGTG			1						1
AGAGGG/CCCTCT	1								1
AGGGCC/CCCTGG	1								1
