Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-16/megassr/results/hub_GCF_000959065.1/fasta/hub_GCF_000959065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              8
Total size of examined sequences (bp):           1190241
Total number of identified SSRs:                 26
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	7
3	2
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2	5
AT	-	-	-							1		1							1	3
TA	-	-	-					2			2									4
TTA	-	-		1																1
TTG	-	-		1																1
AAATA	1																			1
ATATA	1																			1
ATTTT	1																			1
CTTTT	1																			1
TATTA	1																			1
TTTAA	1																			1
TTTTA	1																			1
AAAGAT	1																			1
ATAATT	1																			1
TAGAAA	1																			1
TCTTTT	1																			1
TTTAAG	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2	5
AT/AT	-	-	-					2		1	2	1							1	7
AAC/GTT	-	-		1																1
AAT/ATT	-	-		1																1
AAAAG/CTTTT	1																			1
AAAAT/ATTTT	3																			3
AAATT/AATTT	1																			1
AATAT/ATATT	2																			2
AAAAAG/CTTTTT	1																			1
AAACTT/AAGTTT	1																			1
AAAGAT/ATCTTT	1																			1
AAATAG/ATTTCT	1																			1
AATTAT/AATTAT	1																			1
