Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-15/megassr/results/hub_GCF_000959055.1/fasta/hub_GCF_000959055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1203804
Total number of identified SSRs:                 21
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	2
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT	-	-	-						2				1	3
TA	-	-	-		1	1		2						4
TTA	-	-	1											1
TTG	-	-		1										1
AAATA	1													1
ATATA	1													1
ATTTT	1													1
CTTTT	1													1
TAAAA	1													1
TATTA	1													1
TTTAA	1													1
ATAATT	1													1
ATCTTT	1													1
TAGAAA	1													1
TCTTTT	1													1
TTTAAG	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT/AT	-	-	-		1	1		2	2				1	7
AAC/GTT	-	-		1										1
AAT/ATT	-	-	1											1
AAAAG/CTTTT	1													1
AAAAT/ATTTT	3													3
AAATT/AATTT	1													1
AATAT/ATATT	2													2
AAAAAG/CTTTTT	1													1
AAACTT/AAGTTT	1													1
AAAGAT/ATCTTT	1													1
AAATAG/ATTTCT	1													1
AATTAT/AATTAT	1													1
