Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-30/megassr/results/hub_GCF_000931975.1/fasta/hub_GCF_000931975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              85
Total size of examined sequences (bp):           2469061
Total number of identified SSRs:                 10
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	4
5	3
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AGCA	-		1						1
CAAC	-		1						1
TTGC	-		1						1
TTGG	-		1						1
GCTGT								2	2
TGTTT	1								1
AGCCAT	1								1
CAGCTC	1								1
TCCAGC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AACC/GGTT	-		2						2
AAGC/CTTG	-		2						2
AAAAC/GTTTT	1								1
ACAGC/CTGTG								2	2
AGCCAT/ATGGCT	1								1
AGCTCC/AGCTGG	2								2
