Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-26/megassr/results/hub_GCF_000767035.1/fasta/hub_GCF_000767035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           2101438
Total number of identified SSRs:                 10
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AAGG	-			1	1
AAATA	1				1
ACATT	1				1
TTGAT	1				1
AAAAGA	1				1
ACCATT	1				1
ACGCCT	1				1
CTAAGA		1			1
GAAAAG		1			1
TGAAGA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AAGG/CCTT	-			1	1
AAAAT/ATTTT	1				1
AAATC/ATTTG	1				1
AATGT/ACATT	1				1
AAAAAG/CTTTTT	1				1
AAAAGG/CCTTTT		1			1
AAGACT/AGTCTT		1			1
AAGATG/ATCTTC	1				1
AATGGT/ACCATT	1				1
ACGCCT/AGGCGT	1				1
