Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-53/megassr/results/hub_GCF_000755085.1/fasta/hub_GCF_000755085.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           3493279
Total number of identified SSRs:                 29
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	5
5	11
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	3		3
CG	-	-	-		1	1
GC	-	-	-	5		5
ATG	-	-	1			1
CAG	-	-	1			1
GCC	-	-	1			1
GGC	-	-	2			2
CGCGC	2					2
GCACG	1					1
GCCGG	2					2
GCGGC	1					1
GGCCG			1			1
GGGCA	2					2
GGGCC	1					1
TACGA	1					1
ATGCCG	1					1
CACGAT	1					1
CTCCTT	1					1
GCGCCC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	3		3
CG/CG	-	-	-	5	1	6
AGC/CTG	-	-	1			1
ATC/ATG	-	-	1			1
CCG/CGG	-	-	3			3
ACGAT/ATCGT	1					1
ACGGC/CCGTG	1					1
AGGGC/CCCTG	2					2
CCCGG/CCGGG	3		1			4
CCGCG/CGCGG	3					3
AAGGAG/CCTTCT	1					1
ACGATC/ATCGTG	1					1
ATCGGC/ATGCCG	1					1
CCCGCG/CGCGGG	1					1
