Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-25/megassr/results/hub_GCF_000747565.1/fasta/hub_GCF_000747565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           5101896
Total number of identified SSRs:                 70
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	14
3	22
5	14
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	5		5
GC	-	-	-	8	1	9
AGC	-	-	1			1
CAG	-	-	2			2
CCG	-	-	3			3
CGC	-	-	5	1		6
CGG	-	-	3			3
CTG	-	-	3			3
GCC	-	-	1			1
GCG	-	-	1			1
GCT	-	-		1		1
GGC	-	-	1			1
AAACA	1					1
AACCG	1					1
AATTA	1					1
CGGCG	1					1
GCCGC	1					1
GCGCC	1					1
GCGCG	2					2
GCGGC	2					2
GGCGC	2					2
TGCGC	1					1
TTGCT		1				1
AAAACC	1					1
AGCGCC	1					1
CGATGC	1					1
CGCCGG	1					1
CGGCAC	1					1
CGGCGA	1					1
CGGCGC	1					1
CTGGCG	1					1
GCCGGC	1					1
GCCGGT	1					1
GCGCTG	1					1
GCGGTG	1					1
GCTGGC	2					2
GCTTGG				1		1
GGCCCT	1					1
GGCCGG	1					1
GGGGCT	1					1
TGCCGG	1					1
TGGTCA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	13	1	14
AGC/CTG	-	-	6	1		7
CCG/CGG	-	-	14	1		15
AAAAC/GTTTT	1					1
AAAGC/CTTTG		1				1
AAATT/AATTT	1					1
AACCG/CGGTT	1					1
AGCGC/CGCTG	1					1
CCGCG/CGCGG	9					9
AAAACC/GGTTTT	1					1
AAGCCC/CTTGGG				1		1
ACCATG/ATGGTC	1					1
ACCGCC/CGGTGG	1					1
ACCGGC/CCGGTG	3					3
ACGGCG/CCGTCG	1					1
AGCCCC/CTGGGG	1					1
AGCGCC/CGCTGG	5					5
AGGGCC/CCCTGG	1					1
ATCGGC/ATGCCG	1					1
CCCCGG/CCGGGG	1					1
CCGGCG/CCGGCG	3					3
