Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-24/megassr/results/hub_GCF_000738535.1/fasta/hub_GCF_000738535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              103
Total size of examined sequences (bp):           5298782
Total number of identified SSRs:                 62
Number of SSR containing sequences:              33
Number of sequences containing more than 1 SSR:  17
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	14
3	20
4	1
5	10
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CA	-	-	-	1																			1
CG	-	-	-	4																			4
GC	-	-	-	6	3																		9
AGC	-	-		1																			1
CAG	-	-	1	1																			2
CCG	-	-	2																				2
CGC	-	-	4																				4
CGG	-	-	6																				6
CTG	-	-	2																				2
GCG	-	-	1	1																			2
GGC	-	-	1																				1
AAGA	-	1																					1
AAACA	1																						1
CCTGG				1																			1
CGCCG	1																						1
CGGCG	2																						2
CGGTT	1																						1
CTGGA								1															1
GCCGC	1																						1
GCGCC	1																						1
GGCGC	1																						1
AATTAA	2																						2
CGATGC	1																						1
CGCCAG	2																						2
CGCTGT		1																					1
CGGCAC	1																						1
CGGCGA	1																						1
CTGACG	1																						1
GCACCG	1																						1
GCCGGT	1																						1
GCGCCA	1																						1
GCTGGC	1																						1
GGTCTG	1																						1
GTGAGA	1																						1
TGCCGG	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
AC/GT	-	-	-	1																			1
CG/CG	-	-	-	10	3																		13
AGC/CTG	-	-	3	2																			5
CCG/CGG	-	-	14	1																			15
AAAG/CTTT	-	1																					1
AAAAC/GTTTT	1																						1
AACCG/CGGTT	1																						1
ACTGG/AGTCC								1															1
AGGCC/CCTGG				1																			1
CCGCG/CGCGG	6																						6
AAAATT/AATTTT	2																						2
ACAGCG/CGCTGT		1																					1
ACCCAG/CTGGGT	1																						1
ACCGGC/CCGGTG	4																						4
ACGCTG/AGCGTC	1																						1
ACGGCG/CCGTCG	1																						1
ACTCTC/AGAGTG	1																						1
AGCGCC/CGCTGG	4																						4
ATCGGC/ATGCCG	1																						1
