Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCF_000691245.1/fasta/hub_GCF_000691245.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2871
Total size of examined sequences (bp):           20934132
Total number of identified SSRs:                 13881
Number of SSR containing sequences:              2001
Number of sequences containing more than 1 SSR:  1597
Number of SSRs present in compound formation:    2679


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	47
2	7628
3	4573
4	593
5	468
6	572

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	3		1	3			1		1											11
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	4	1	2					1			1				1				1	15
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1	2	1	1																8
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	4	2	1	1	2						1								13
AC	-	-	-	166	155	124	101	77	56	39	19	19	12	7	6	3	2	1				1																788
AG	-	-	-	119	94	105	75	57	37	23	11	13	7	4	3	4	2		3			1																558
AT	-	-	-	120	120	142	160	188	140	85	71	50	26	11	8	3	2	1																				1127
CA	-	-	-	212	176	145	114	86	78	58	31	22	23	11	5	5	3	6	1	2	1		1			1												981
CG	-	-	-	5	2	2																																9
CT	-	-	-	86	83	88	77	42	22	13	11	3	9	5	1		3	1					1															445
GA	-	-	-	105	89	86	82	42	27	12	11	6	6	2	2	2																						472
GC	-	-	-	10	2	1																																13
GT	-	-	-	147	112	101	89	62	48	31	25	16	15	10	2	3	3	2	1																			667
TA	-	-	-	111	98	99	141	131	119	69	62	36	15	10	3	1	2																					897
TC	-	-	-	121	103	96	99	75	22	20	13	14	9	4	2	3	2	3				1																587
TG	-	-	-	252	194	161	164	91	64	47	40	24	21	10	5	4	1	4	2																			1084
AAC	-	-	94	67	24	10	7	1	1																													204
AAG	-	-	10	4																																		14
AAT	-	-	24	19	8	4	6	1		1																												63
ACA	-	-	48	25	11	6	2	1																														93
ACC	-	-	9	10	8	1	2		1																													31
ACG	-	-	8	8	1	1																																18
ACT	-	-	8	2	1	1	2	1																														15
AGA	-	-	4	3	1	1																																9
AGC	-	-	104	68	29	12	8	3	1																													225
AGG	-	-	20	15	9	5	1			1																												51
AGT	-	-	8	6	5	3				1			1																									24
ATA	-	-	8	8	1	1		1	1																													20
ATC	-	-	17	5	5	1	2	2																														32
ATG	-	-	17	7	3	4	2	1																														34
ATT	-	-	2	2	1	2	2		2																													11
CAA	-	-	94	48	35	18	6	2	4																													207
CAC	-	-	40	30	15	8	3	3		1																												100
CAG	-	-	156	94	57	24	7	2	2				1																									343
CAT	-	-	16	17	12	1	1	1		1																												49
CCA	-	-	45	26	19	8	2	1																														101
CCG	-	-	17	8	4	5	1																															35
CCT	-	-	30	20	6	5	1		1																													63
CGA	-	-	18	4	1			1																														24
CGC	-	-	29	12	2	2	1																															46
CGG	-	-	12	5	2		1																															20
CGT	-	-	14	4	1	3		1																														23
CTA	-	-	5	6	4	3	1		1		1																											21
CTC	-	-	29	15	7	4		2																														57
CTG	-	-	128	81	40	24	11	2																														286
CTT	-	-	6	1	1																																	8
GAA	-	-	19	2	1																																	22
GAC	-	-	22	13	3	2	1	1																														42
GAG	-	-	38	19	12	11	2																															82
GAT	-	-	26	9	4	5	2	2		1																												49
GCA	-	-	125	74	42	16	5	1																														263
GCC	-	-	36	9	5	3	2	1																														56
GCG	-	-	33	12	1	4		1																														51
GCT	-	-	116	77	48	22	9	2	1		1																											276
GGA	-	-	27	14	5	3	3																															52
GGC	-	-	29	18	4	3		1																														55
GGT	-	-	38	17	15		1			1																												72
GTA	-	-	6	5	2	5	1	2	1																													22
GTC	-	-	10	7	5		1																															23
GTG	-	-	29	28	11	6	3			1																												78
GTT	-	-	53	19	10	6	6					1																										95
TAA	-	-	2	4	2	3																																11
TAC	-	-	7	7	2	1	3	2	2							1																						25
TAG	-	-	5	3	3	2	1		1		1		1																									17
TAT	-	-	6	4	6	1	2	1	1			2																										23
TCA	-	-	23	19	6	7	1	1	1																													58
TCC	-	-	30	26	11	4	2	1																														74
TCG	-	-	10	4	6	1	2																															23
TCT	-	-	11		2																																	13
TGA	-	-	17	9	8	6	2	1																														43
TGC	-	-	148	78	47	15	6	2	3		1																											300
TGG	-	-	33	20	17	7	3																															80
TGT	-	-	91	50	24	14	2	3			1																											185
TTA	-	-	16	12	9	5	3	5	3		2	1																										56
TTC	-	-	11	9		1			1																													22
TTG	-	-	92	45	18	7	10	3	1	1	1																											178
AAAC	-	30	15	6																																		51
AAAG	-	13	5		1																																	19
AAAT	-	5			1																																	6
AACA	-	7	3	1																																		11
AAGA	-	2	5	2																																		9
AAGC	-		1																																			1
AAGG	-	4	1																																			5
AATA	-	4	1	1																																		6
AATG	-	3																																				3
ACAA	-	8			1																																	9
ACAG	-	10	1			1																																12
ACAT	-	3	5	1	1																																	10
ACCC	-	1	1																																			2
ACCT	-		1																																			1
ACGC	-	1																																				1
ACTC	-	1																																				1
AGAA	-	4	1	1																																		6
AGAC	-	6	4	1	1																																	12
AGAT	-	3	1																																			4
AGGA	-	1	1																																			2
AGGG	-	2																																				2
AGTG	-	4	1	1																																		6
ATAA	-	6	1	1																																		8
ATAC	-	4	2		1				1																													8
ATAG	-	4	2																																			6
ATCA	-	1																																				1
ATCG	-	1																																				1
ATCT	-	2																																				2
ATGG	-		1																																			1
ATGT	-	2	1																																			3
ATTA	-	1																																				1
ATTC	-	1																																				1
ATTT	-	3																																				3
CAAA	-	7	3																																			10
CAAC	-	1																																				1
CACG	-	3																																				3
CACT	-	4	2	2																																		8
CAGA	-	5	1	1																																		7
CAGG	-	1																																				1
CATA	-	4	3			1																																8
CATC	-			1																																		1
CATG	-	2																																				2
CATT	-	1	1																																			2
CCAC	-	2																																				2
CCCA	-	1																																				1
CCCT	-	2		1																																		3
CCTC	-	2																																				2
CCTT	-	1	1	1		1																																4
CGTG	-	2	1																																			3
CTAT	-	5																																				5
CTCA	-	3		1	1																																	5
CTCC	-	6	1																																			7
CTCG	-		1																																			1
CTGA	-		1	1																																		2
CTGC	-		2																																			2
CTGT	-	2	1	2	2			1																														8
CTTC	-	3	1																																			4
CTTG	-	1																																				1
CTTT	-	1	2	1																																		4
GAAA	-	6	5																																			11
GAAG	-	1																																				1
GAAT	-		1																																			1
GACA	-	1	1	1																																		3
GACT	-	1																																				1
GAGG	-	1	3																																			4
GAGT	-	5	4	1																																		10
GATA	-	4																																				4
GATG	-				1																																	1
GATT	-	1																																				1
GCAC	-		1																																			1
GCAT	-	2																																				2
GCCA	-	1																																				1
GGAA	-	5	1	2																																		8
GGAC	-	1																																				1
GGAG	-	2	1	1	1																																	5
GGCA	-	1																																				1
GGGA	-	2																																				2
GGGT	-	1																																				1
GGTG	-	2																																				2
GGTT	-		1																																			1
GTAT	-	1	2		1																																	4
GTCA	-		1																																			1
GTCT	-	1	1																																			2
GTGA	-	2	3																																			5
GTGC	-	2																																				2
GTGG	-	1	1																																			2
GTTT	-	7	1																																			8
TAAA	-			1																																		1
TACA	-	1	1																																			2
TAGA	-	3																																				3
TAGG	-		1																																			1
TATC	-	3	7	1																																		11
TATG	-	3	1																																			4
TATT	-	4	4																																			8
TCAC	-	4	2	1																																		7
TCAG	-	1																																				1
TCAT	-	1																																				1
TCCA	-	1																																				1
TCCC	-	2																																				2
TCCT	-	2			1																																	3
TCTA	-	4	3	1	1																																	9
TCTG	-	7	1																																			8
TCTT	-	11	1		1																																	13
TGAG	-	4	1	1																																		6
TGAT	-	1	1																																			2
TGCA	-	3																																				3
TGCC	-	2																																				2
TGCG	-	4	1																																			5
TGGG	-		1																																			1
TGTA	-	3	3																																			6
TGTC	-	3	4																																			7
TGTT	-	8	4	1																																		13
TTAT	-	3	1																																			4
TTCA	-	2																																				2
TTCC	-	6	3																																			9
TTCG	-	1																																				1
TTCT	-	9																																				9
TTGC	-	1				1																																2
TTGT	-	9	3	2																																		14
TTTA	-	1	2																																			3
TTTC	-	2	5	1	1	1																																10
TTTG	-	15	4	3																																		22
AAAAC	19	4																																				23
AAAAG	7	1																																				8
AAAAT	6	2																																				8
AAACA	6	1																																				7
AAAGA	5	2																																				7
AAAGC		1																																				1
AAAGG	2	1																																				3
AAATA	3		1																																			4
AAATT	1																																					1
AACAA	4																																					4
AACAC	1																																					1
AACTC	1																																					1
AAGAA	5	2																																				7
AAGAG	1																																					1
AAGCA	1																																					1
AATAA	1																																					1
AATAT	3	1																																				4
AATGA	1	1																																				2
AATTA		1																																				1
AATTT	1																																					1
ACAAA	10																																					10
ACAAG	1																																					1
ACACA	1																																					1
ACCCA	1																																					1
ACCCC	4		1																																			5
ACCGC	1																																					1
ACGCA	1																																					1
ACGGC	1																																					1
AGAAA	3																																					3
AGAGA	1	1			1																																	3
AGAGC	1																																					1
AGAGG	1																																					1
AGCAA	1																																					1
AGCAC	1																																					1
AGGAA		1																																				1
AGGGG	3																																					3
ATAAA	4																																					4
ATACA	1																																					1
ATAGC	1																																					1
ATATA	4																																					4
ATATC	1																																					1
ATATT	3																																					3
ATGTA	1																																					1
ATTTA	2																																					2
ATTTT	3																																					3
CAAAA	12	1																																				13
CACAA	1																																					1
CACAC		1					1																															2
CACCA	2																																					2
CACCC	3																																					3
CACCG	1																																					1
CACCT	1																																					1
CACTT	1																																					1
CAGCG	1																																					1
CCAAA	2																																					2
CCAAC	2																																					2
CCACA	2	1																																				3
CCACC	5																																					5
CCCAA	1																																					1
CCCAC	2																																					2
CCCCA	1	2																																				3
CCCCG	1																																					1
CCCCT	1	1																																				2
CCCTT	1																																					1
CCGCC	2																																					2
CCGTG	2																																					2
CCTCT			1																																			1
CCTTA	1																																					1
CCTTT	1																																					1
CGAAA	1																																					1
CGACG	1																																					1
CGCAC	1																																					1
CGCCA	2																																					2
CGCCG	1																																					1
CGCCT	1																																					1
CGCGG	3																																					3
CGCGT	1																																					1
CGGAG	1																																					1
CGGCG	1																																					1
CGTCC		1																																				1
CGTCT	1																																					1
CGTGT		1																																				1
CTCAG	2																																					2
CTCCC	1	1																																				2
CTCCT	1																																					1
CTCTC		1																																				1
CTCTT		1																																				1
CTGCG	2																																					2
CTGCT	1																																					1
CTTCT	2																																					2
CTTGT	1																																					1
CTTTG	1																																					1
CTTTT	9	1																																				10
GAAAA	11																																					11
GAAAG	1																																					1
GACGC	1																																					1
GAGAA	1	1																																				2
GAGAG	2	2	1																																			5
GAGCA	3																																					3
GAGGG	1																																					1
GCACA	1																																					1
GCACC	2	1																																				3
GCAGC	2																																					2
GCAGT	1																																					1
GCATC	1																																					1
GCCCA	1																																					1
GCCCG	1																																					1
GCCGT	1																																					1
GCGCA	2																																					2
GCGCC	3																																					3
GCGGC	1																																					1
GCTCT	1																																					1
GGAAG		1																																				1
GGAGG	3																																					3
GGCGT	1																																					1
GGGAG	4																																					4
GGGCA		1																																				1
GGGGA	1	1																																				2
GGGGC	1																																					1
GGGGT	2																																					2
GGGTG	3	1																																				4
GGGTT	2																																					2
GGTGG	3	1	1																																			5
GGTGT	2																																					2
GTGCA	1																																					1
GTGGG	1	1																																				2
GTGGT	2																																					2
GTGTG	2																																					2
GTGTT	1																																					1
GTTGT	2																																					2
GTTTG	1																																					1
GTTTT	5																																					5
TAAAA	4																																					4
TAAAT	2																																					2
TAATA	1																																					1
TAATT	1																																					1
TAGGT	1																																					1
TATAT	3			1																																		4
TATTA		1																																				1
TATTT	3	2																																				5
TCACT	2																																					2
TCCTC	1																																					1
TCCTT	3																																					3
TCTTC	1																																					1
TCTTT	4	1																																				5
TGACG		1																																				1
TGCCA	1																																					1
TGCGC	2																																					2
TGCGG	1																																					1
TGGAG	1																																					1
TGGGG	3	1																																				4
TGGGT	1																																					1
TGGTG	2																																					2
TGTGC	1																																					1
TGTGG	2																																					2
TGTTT	9	1	1																																			11
TTATT	5	1		1																																		7
TTCCT	2																																					2
TTCTC	2																																					2
TTCTT	3	2																																				5
TTGTG	1																																					1
TTGTT	5	1																																				6
TTTAT	3																																					3
TTTCA	1																																					1
TTTCC		1																																				1
TTTCG	1																																					1
TTTCT	8																																					8
TTTGT	8	1																																				9
TTTTA	2																																					2
TTTTC	12	1																																				13
TTTTG	21	7																																				28
AAAAAC	5																																					5
AAAAAT	1																																					1
AAAACA	4																																					4
AAAAGG	1	1																																				2
AAACAA	2																																					2
AAAGAA	2																																					2
AAAGAG			1																																			1
AAAGCA	1																																					1
AAATAA		1																																				1
AAATAT	1																																					1
AAATCA	2																																					2
AACAAA	2																																					2
AACAAT	1																																					1
AACAGC	1		1																																			2
AACCCC	1	1																																				2
AACTTA	1																																					1
AAGAAA	3																																					3
AAGAGG	1																																					1
AAGCAG			1																																			1
AAGGCG	1																																					1
AAGGGG	1																																					1
AATAAC	1																																					1
AATAGT		1																																				1
AATATA	1																																					1
AATATG	1																																					1
ACAAAA	2																																					2
ACAACG	2																																					2
ACACAA	1																																					1
ACACAG	2	1																																				3
ACACAT	1	1																																				2
ACACCC	2																																					2
ACAGAC	1																																					1
ACAGAG	1																																					1
ACAGCA					1																																	1
ACAGCT	1																																					1
ACCACA	1																																					1
ACCACT	2																																					2
ACCGCC	1	1																																				2
ACGATG	1																																					1
ACGCAG	1																																					1
ACGCCG	1																																					1
ACGGCG	1																																					1
ACTCAC	1																																					1
ACTGCC	1																																					1
ACTGCG	1																																					1
ACTGCT	2																																					2
AGAAAA	1																																					1
AGAAAG	1																																					1
AGAAAT	1																																					1
AGAAGG	2																																					2
AGAGAA	1																																					1
AGAGAC	1																																					1
AGAGGG	2	1																																				3
AGCAAC	2																	1																				3
AGCAAG	1																																					1
AGCAGA	1																																					1
AGCAGG	1																																					1
AGCAGT	2																																					2
AGGAAG	2																																					2
AGGAGC	1																																					1
AGGATG	2																																					2
AGGCGG	1	1																																				2
AGGGTT																								1														1
AGGTGC	1																																					1
AGTAAG	1																																					1
AGTCTC	1																																					1
AGTGCT	1																																					1
ATAAAA	1																																					1
ATAAAT	1																																					1
ATAATC	1																																					1
ATAGAT	2	1																																				3
ATATAA	3																																					3
ATATAC	2																																					2
ATATCC	1																																					1
ATATCT									1																													1
ATCCTT		1																																				1
ATCGTC		1																																				1
ATCTAT	2																																					2
ATGAGC	1																																					1
ATGAGG	1																																					1
ATGCAG		1																																				1
ATGGGC	1																																					1
ATGTGC	1																																					1
ATGTTG	1																																					1
ATTCCC	1																																					1
ATTTTT	1																																					1
CAAAAA	4																																					4
CAAACA	1																																					1
CAACAC	1																																					1
CAACAG	4																																					4
CAACCA	1																																					1
CAATAA	1																																					1
CACAAT	1																																					1
CACACC	2																																					2
CACACT	1																																					1
CACAGG	1																																					1
CACATG	1																																					1
CACCAG	1																																					1
CACCAT	2																																					2
CACCCA		1																																				1
CACCCC	1																																					1
CACCGA	1																																					1
CACGCA	1																																					1
CACGGT	1																																					1
CACTGT	1																																					1
CAGAAG	2	1																																				3
CAGCAA	12	1																																				13
CAGCCA	1	1																																				2
CAGCCC	1																																					1
CAGCGG	1																																					1
CAGCTC	1																																					1
CAGGAA		1																																				1
CAGGAG	1		1																																			2
CAGGCG	1																																					1
CAGTAG	2																																					2
CATACA	1																																					1
CATACC	1																																					1
CATATA	1																																					1
CATCAC	1	1																																				2
CATCAG	1																																					1
CATCTC	1																																					1
CATTGC	1																																					1
CCAAAA	1																																					1
CCAACC		1																																				1
CCACAC	1																																					1
CCACAG	2																																					2
CCACCG	3	1	1																																			5
CCAGCA		1																																				1
CCATCA	1																																					1
CCCCCA		1																																				1
CCCTAA					1			1			2	3	1																									8
CCCTCT		1																																				1
CCGCAG	1																																					1
CCGCCA	2		1																																			3
CCTCAC	1																																					1
CCTCCA	1																																					1
CCTCCC	1																																					1
CCTCTT	1																																					1
CCTGCT	1																																					1
CGACAA	1																																					1
CGACAG	1																																					1
CGCACC	2																																					2
CGCAGC	1																																					1
CGCCAC	1																																					1
CGCCTC	1																																					1
CGCGAC		1																																				1
CGGAGG	1																																					1
CGGTGA		1																																				1
CGGTGG	1																																					1
CGTCCT		1																																				1
CGTCGC	1																																					1
CGTTTT	1																																					1
CTACCA	1																																					1
CTACTG	3																																					3
CTATAT	2																																					2
CTATTA	1																																					1
CTCATC	1		1	1																																		3
CTCCAC	1																																					1
CTCCCG	1																																					1
CTCCCT	1																																					1
CTCCGC	2	1																																				3
CTCCGG	1																																					1
CTCCTG	1																																					1
CTCCTT			1																																			1
CTCTCA		1																																				1
CTCTCC	2	1																																				3
CTCTTC	2	1																																				3
CTCTTT	1																																					1
CTGAGG	1																																					1
CTGCCG	1																																					1
CTGCCT	1																																					1
CTGCGG	1																																					1
CTGCTA	2																																					2
CTGCTC	1	1																																				2
CTGCTT	3																																					3
CTGGTA	1																																					1
CTGTGT	1																																					1
CTGTTG	4																																					4
CTTCCT	3																																					3
CTTCGC	1																																					1
CTTGGG	1																																					1
CTTTCT	2																																					2
GAAAGA	2																																					2
GAAGAG	2																																					2
GAAGCA	2																																					2
GACACA	1																																					1
GACACC	1																																					1
GACACG	2																																					2
GACGAA	1																																					1
GACGAT		1																																				1
GACGCC	1																																					1
GAGACA	2																																					2
GAGAGC	1																																					1
GAGAGG	2																																					2
GAGAGT	1																																					1
GAGATG	1																																					1
GAGCAG	1																																					1
GAGCCA	1																																					1
GAGCGC	1																																					1
GAGGAA	6	1																																				7
GAGGAC	2	1																																				3
GAGGAT	2	1																																				3
GAGGTG	1																																					1
GATAGA	1																																					1
GATCTG	1																																					1
GATGCC	1																																					1
GATGCT	2																																					2
GCAACA	1		1		1																																	3
GCAACG	1		1																																			2
GCACAC	3																																					3
GCACCG	1																																					1
GCACTC			1																																			1
GCAGAA	1																																					1
GCAGCC	1																																					1
GCAGCG	4	1																																				5
GCAGCT	1																																					1
GCAGGA	1																																					1
GCCACA	1																					1																2
GCCACC		1																																				1
GCCAGC	1																																					1
GCCGAC	1																																					1
GCCGCA	2																																					2
GCCGCT	3																																					3
GCCGTC	1																																					1
GCGACA	1																																					1
GCGGAG	1																																					1
GCGGCA	3		1																																			4
GCGGCT		1																																				1
GCGGGG	1																																					1
GCGGTG	1																																					1
GCGGTT		1																																				1
GCGTGT	1																																					1
GCTCCT	1																																					1
GCTCTC	1																																					1
GCTGCC	1																																					1
GCTGCG	1	1																																				2
GCTGGT	1																																					1
GCTGTA	1																																					1
GCTGTT	1																																					1
GCTTCT	1																																					1
GGAAGA	1																																					1
GGAGAG			1																																			1
GGAGAT	1																																					1
GGAGCA	1																																					1
GGAGGC			1																																			1
GGAGTC	1																																					1
GGCAGC	2																																					2
GGCATG	1																																					1
GGCCGT	1																																					1
GGCGAA		1																																				1
GGCGGT	4	1																																				5
GGCTGC	1																																					1
GGGAAT	1																																					1
GGGAGA		1																																				1
GGGAGC	1																																					1
GGGCGG	1																																					1
GGGGAG	1																																					1
GGGGGA	1																																					1
GGGTTA	1											1																										2
GGGTTG		1																																				1
GGTGGA			1																																			1
GGTGGC	1	1																																				2
GGTGTT	1																																					1
GGTTAG										1	1		1																									3
GTAGCA	2																																					2
GTAGTC	1																																					1
GTATGT	1																																					1
GTCATC	2																																					2
GTCCCT	1																																					1
GTCTCT	1																																					1
GTGCGT	2																																					2
GTGGAC	1																																					1
GTGGCA	1																																					1
GTGGCG		1																																				1
GTGGGC	1		1																																			2
GTGTAT		1																																				1
GTGTCT	2																																					2
GTGTGC	1																																					1
GTGTGG	3																																					3
GTTGCC	1																																					1
GTTGCG	1																																					1
GTTGCT	3																																					3
GTTGTA		1																																				1
GTTGTG	1																																					1
TACATA	1																																					1
TACCAC		1																																				1
TAGTGG	1																																					1
TATACG	1																																					1
TATAGG	1																																					1
TATATC	1																																					1
TATATG	3	1																																				4
TATATT	2	1																																				3
TATGTA	2																																					2
TATTTA	1																																					1
TATTTT	1																																					1
TCATCT	1																																					1
TCCCCC	1																																					1
TCCCTA	1																																					1
TCCCTT	1																																					1
TCCGCT		1																																				1
TCCTCA	1																																					1
TCCTCG	3																																					3
TCCTGC		3																																				3
TCCTGT		1																																				1
TCCTTC		1																																				1
TCGTCA	1		1																																			2
TCGTCC		1																																				1
TCTCAT	1																																					1
TCTCCT	1																																					1
TCTCTT	2																																					2
TCTGCC				1																																		1
TCTGTC	1																																					1
TCTGTG	4	1																																				5
TCTGTT	1																																					1
TCTTCC	2																																					2
TCTTTC	1																																					1
TGATGC	1																																					1
TGATGG	1																																					1
TGCAGC	1																																					1
TGCCGA	1																																					1
TGCCGG	2																																					2
TGCGTA	1																																					1
TGCGTC		1																																				1
TGCGTG	1																																					1
TGCTAC	1																																					1
TGCTAT	1																																					1
TGCTGA	1																																					1
TGCTGG		1																																				1
TGCTGT	3																																					3
TGCTTC	1																																					1
TGGACG	1																																					1
TGGAGC	1																																					1
TGGAGG	1																																					1
TGGCTG	1																																					1
TGGTAA	1																																					1
TGGTGC	1		1																																			2
TGTCTG	2																																					2
TGTGAA	1																																					1
TGTGCG	1																																					1
TGTGGT	1	1																																				2
TGTGTC	4																																					4
TGTGTT	1																																					1
TGTTGC	4																																					4
TGTTGG	1	1																																				2
TGTTTT	1	1																																				2
TTAATT	1																																					1
TTATTT	1		1																																			2
TTCCTT	1																																					1
TTCGTC	1																																					1
TTCTGC	1																																					1
TTCTGT	1																																					1
TTGCCA	1																																					1
TTGCCG	1																																					1
TTGCTG	1	1																																				2
TTGTTT	1																																					1
TTTAAT	1	1																																				2
TTTATT	1																																					1
TTTCTC	1																																					1
TTTGTG	1																																					1
TTTGTT	3																																					3
TTTTAT	2																																					2
TTTTCA	2																																					2
TTTTCT	1																																					1
TTTTGC	1																																					1
TTTTGT	1	1																																				2
TTTTTA	3																																					3
TTTTTC	3																																					3
TTTTTG	7	1																																				8

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	4	4	3	4	1	2	1		1			1								24
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	7	5	3	3	1				1			1				1				1	23
AC/GT	-	-	-	777	637	531	468	316	246	175	115	81	71	38	18	15	9	13	4	2	1	1	1			1												3520
AG/CT	-	-	-	431	369	375	333	216	108	68	46	36	31	15	8	9	7	4	3			2	1															2062
AT/AT	-	-	-	231	218	241	301	319	259	154	133	86	41	21	11	4	4	1																				2024
CG/CG	-	-	-	15	4	3																																22
AAC/GTT	-	-	472	254	122	61	33	10	6	1	2	1																										962
AAG/CTT	-	-	61	19	5	2			1																													88
AAT/ATT	-	-	58	49	27	16	13	8	7	1	2	3																										184
ACC/GGT	-	-	194	131	85	30	14	4	1	3																												462
ACG/CGT	-	-	82	40	17	7	4	3																														153
ACT/AGT	-	-	39	29	17	15	8	5	5	1	2		2			1																						124
AGC/CTG	-	-	777	472	263	113	46	12	7		2		1																									1693
AGG/CCT	-	-	174	109	50	32	9	3	1	1																												379
ATC/ATG	-	-	116	66	38	24	10	8	1	2																												265
CCG/CGG	-	-	156	64	18	17	5	3																														263
AAAC/GTTT	-	91	33	13	1																																	138
AAAG/CTTT	-	48	24	5	3	1																																81
AAAT/ATTT	-	26	9	3	1																																	39
AACC/GGTT	-	1	1																																			2
AACG/CGTT	-	1																																				1
AAGC/CTTG	-	2	1			1																																4
AAGG/CCTT	-	23	8	3	1	1																																36
AATC/ATTG	-	3	1																																			4
AATG/ATTC	-	8	2																																			10
AATT/AATT	-	1																																				1
ACAG/CTGT	-	35	14	5	3	1		1																														59
ACAT/ATGT	-	21	18	1	3	1			1																													45
ACCC/GGGT	-	8	3																																			11
ACCT/AGGT	-		2																																			2
ACGC/CGTG	-	12	3																																			15
ACGG/CCGT	-	1																																				1
ACTC/AGTG	-	27	13	7	1																																	48
ACTG/AGTC	-	2	2	1																																		5
AGAT/ATCT	-	28	13	2	1																																	44
AGCC/CTGG	-	1																																				1
AGCG/CGCT	-		1																																			1
AGGC/CCTG	-	4	2																																			6
AGGG/CCCT	-	19	5	2	1																																	27
ATCC/ATGG	-	1	1	1	1																																	4
ATCG/ATCG	-	1																																				1
ATGC/ATGC	-	7																																				7
AAAAC/GTTTT	99	16	1																																			116
AAAAG/CTTTT	67	10																																				77
AAAAT/ATTTT	34	5	1	1																																		41
AAACC/GGTTT	3																																					3
AAACG/CGTTT	2																																					2
AAAGC/CTTTG	3	1																																				4
AAAGG/CCTTT	9	3																																				12
AAATG/ATTTC	2	1																																				3
AAATT/AATTT	7	1																																				8
AACAC/GTGTT	7																																					7
AACCC/GGGTT	7																																					7
AACCT/AGGTT	1																																					1
AACGC/CGTTG	1																																					1
AACTC/AGTTG	1																																					1
AAGAC/CTTGT	2																																					2
AAGAG/CTCTT	8	3			1																																	12
AAGGG/CCCTT	1	1																																				2
AAGGT/ACCTT	1																																					1
AAGTG/ACTTC	3																																					3
AATAC/ATTGT	1																																					1
AATAT/ATATT	14	2		1																																		17
AATGT/ACATT	1																																					1
ACACC/GGTGT	14	2					1																															17
ACACG/CGTGT		1																																				1
ACAGC/CTGTG	3																																					3
ACCCC/GGGGT	27	6	2																																			35
ACCGC/CGGTG	6	1																																				7
ACCTC/AGGTG	1																																					1
ACGAG/CGTCT	1																																					1
ACGCC/CGTGG	3																																					3
ACGCG/CGCGT	3																																					3
ACGGC/CCGTG	4																																					4
ACGGG/CCCGT		1																																				1
ACGTC/ACGTG		1																																				1
ACTCC/AGTGG	1																																					1
ACTGC/AGTGC	2																																					2
AGAGC/CTCTG	6																																					6
AGAGG/CCTCT	5	3	2																																			10
AGCAT/ATGCT	1																																					1
AGCCC/CTGGG	1																																					1
AGCGC/CGCTG	9																																					9
AGCGG/CCGCT	1																																					1
AGCTC/AGCTG	2																																					2
AGGCG/CCTCG	1																																					1
AGGGC/CCCTG		1																																				1
AGGGG/CCCCT	14	3																																				17
ATATC/ATATG	1																																					1
ATCGC/ATGCG	1																																					1
ATGCC/ATGGC	1																																					1
CCCCG/CGGGG	4																																					4
CCCGG/CCGGG	1																																					1
CCGCG/CGCGG	9																																					9
AAAAAC/GTTTTT	32	3																																				35
AAAAAG/CTTTTT	10																																					10
AAAAAT/ATTTTT	11	1	1																																			13
AAAACC/GGTTTT	1																																					1
AAAACG/CGTTTT	1																																					1
AAAAGC/CTTTTG	2																																					2
AAAAGG/CCTTTT	2	1																																				3
AAAATC/ATTTTG	2																																					2
AAAATG/ATTTTC	2																																					2
AAAATT/AATTTT	2	1																																				3
AAACAC/GTGTTT	4																																					4
AAACAG/CTGTTT	2																																					2
AAACTT/AAGTTT	1																																					1
AAAGAG/CTCTTT	11		1																																			12
AAAGGG/CCCTTT	1																																					1
AAATAG/ATTTCT	1																																					1
AAATAT/ATATTT	9	1																																				10
AACAAT/ATTGTT	3																																					3
AACACC/GGTGTT	3	1																																				4
AACAGC/CTGTTG	36	2	2		2													1																				43
AACAGG/CCTGTT		2																																				2
AACATC/ATGTTG	1																																					1
AACCAC/GGTTGT	4	1																																				5
AACCCC/GGGGTT	1	3																																				4
AACCCT/AGGGTT	1				1			1		1	3	4	2											1														14
AACCGC/CGGTTG	1	1																																				2
AACGAC/CGTTGT	3																																					3
AACGGC/CCGTTG	3		1																																			4
AACTAC/AGTTGT		1																																				1
AAGACG/CGTCTT	2																																					2
AAGAGC/CTCTTG	1																																					1
AAGAGG/CCTCTT	20	2																																				22
AAGAGT/ACTCTT	1																																					1
AAGATG/ATCTTC	1																																					1
AAGCAG/CTGCTT	12	1	1																																			14
AAGCCC/CTTGGG	1																																					1
AAGCGG/CCGCTT		1																																				1
AAGGAG/CCTTCT	3	1	1																																			5
AAGGAT/ATCCTT		1																																				1
AAGGCG/CCTTCG	2	1																																				3
AAGGGG/CCCCTT	1																																					1
AATAGC/ATTGCT	1																																					1
AATAGT/ACTATT	1	1																																				2
AATATG/ATATTC	1																																					1
AATCAC/ATTGTG	1																																					1
AATCAT/ATGATT	1																																					1
AATGAG/ATTCTC	1																																					1
AATGGC/ATTGCC	2																																					2
AATGGG/ATTCCC	2																																					2
AATGGT/ACCATT	1																																					1
AATGTG/ACATTC	1																																					1
ACACAG/CTGTGT	17	2																																				19
ACACAT/ATGTGT	3	2																																				5
ACACCC/GGGTGT	8	1																																				9
ACACCG/CGGTGT	2																																					2
ACACGC/CGTGTG	10																																					10
ACACGG/CCGTGT	2																																					2
ACACTC/AGTGTG	2																																					2
ACAGAG/CTCTGT	6																																					6
ACAGCC/CTGTGG	5	1																				1																7
ACAGCG/CGCTGT	2																																					2
ACAGCT/AGCTGT	2																																					2
ACAGGC/CCTGTG	1																																					1
ACAGGG/CCCTGT	1																																					1
ACAGTG/ACTGTC	1																																					1
ACATAT/ATATGT	9	1																																				10
ACATGC/ATGTGC	2																																					2
ACCACT/AGTGGT	4	1																																				5
ACCAGC/CTGGTG	3	2	1																																			6
ACCAGT/ACTGGT	1																																					1
ACCATC/ATGGTG	5	1																																				6
ACCCAT/ATGGGT	1																																					1
ACCCCC/GGGGGT	1	1																																				2
ACCCGC/CGGGTG	2																																					2
ACCCTC/AGGGTG	1																																					1
ACCGCC/CGGTGG	14	6	2																																			22
ACCGCG/CGCGGT		1																																				1
ACCGGC/CCGGTG	3																																					3
ACCGTC/ACGGTG		1																																				1
ACCGTG/ACGGTC	1																																					1
ACCTAT/AGGTAT	1																																					1
ACCTCC/AGGTGG	4		1																																			5
ACCTGC/AGGTGC	1																																					1
ACGACT/AGTCGT	1																																					1
ACGAGG/CCTCGT	5	3																																				8
ACGATG/ATCGTC	4	2	1																																			7
ACGCAG/CGTCTG	1	1																																				2
ACGCAT/ATGCGT	1																																					1
ACGCCC/CGTGGG	1		1																																			2
ACGCCG/CGGCGT	3																																					3
ACGGCC/CCGTGG	1																																					1
ACGGCG/CCGTCG	3																																					3
ACGTAT/ACGTAT	1																																					1
ACGTCC/ACGTGG	2																																					2
ACTAGC/AGTGCT	1																																					1
ACTCCG/AGTCGG	1																																					1
ACTCGC/AGTGCG			1																																			1
ACTCTC/AGAGTG	1	1																																				2
ACTGAG/AGTCTC	1																																					1
ACTGCC/AGTGGC	2																																					2
ACTGCG/AGTCGC	1																																					1
ACTGCT/AGCAGT	14																																					14
AGAGAT/ATCTCT	1																																					1
AGAGCC/CTCTGG	1																																					1
AGAGCG/CGCTCT	2																																					2
AGAGGC/CCTCTG	1			1																																		2
AGAGGG/CCCTCT	7	4	1																																			12
AGATAT/ATATCT	7	1							1																													9
AGATCC/ATCTGG	1																																					1
AGATGC/ATCTGC		1																																				1
AGATGG/ATCTCC	3																																					3
AGCAGG/CCTGCT	10	4	1																																			15
AGCATC/ATGCTG	5																																					5
AGCATG/ATGCTC	1																																					1
AGCCCC/CTGGGG	1																																					1
AGCCGC/CGGCTG	8	2																																				10
AGCCGG/CCGGCT	1																																					1
AGCCTC/AGGCTG	1																																					1
AGCGCC/CGCTGG	1																																					1
AGCGCG/CGCGCT	1																																					1
AGCGGC/CCGCTG	15	1	1																																			17
AGCGGG/CCCGCT	2																																					2
AGCTCC/AGCTGG	2																																					2
AGCTGC/AGCTGC	2																																					2
AGGATG/ATCCTC	7	1	1	1																																		10
AGGCGC/CCTGCG	1																																					1
AGGCGG/CCGCCT	6	2	1																																			9
AGGGAT/ATCCCT	1																																					1
AGGGGG/CCCCCT	4																																					4
ATATCC/ATATGG	1																																					1
ATCGGC/ATGCCG	2																																					2
ATGCCC/ATGGGC	2																																					2
CCCCCG/CGGGGG	2																																					2
