Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-24/megassr/results/hub_GCF_000227605.3/fasta/hub_GCF_000227605.3_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2369131
Total number of identified SSRs:                 9
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	6
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	total
ACAAC	2	2
CGATG	1	1
CGCGC	1	1
TGTGT	2	2
ACCCAG	1	1
GAAATT	1	1
GCCGTG	1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	total
AACAC/GTGTT	4	4
ATCGC/ATGCG	1	1
CCGCG/CGCGG	1	1
AAATTG/AATTTC	1	1
ACCCAG/CTGGGT	1	1
ACGGCC/CCGTGG	1	1
