Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_977926845.1/fasta/hub_GCA_977926845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              14
Total size of examined sequences (bp):           23209077
Total number of identified SSRs:                 72450
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    31131


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	12075
2	40473
3	6874
4	5578
5	5197
6	2253

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	694	598	560	504	470	459	412	363	338	322	230	160	132	123	97	96	109	93	76	59	38	21	19	12	9	5	4	2	3	1	1	5		3		1																																												6019
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	769	599	545	520	512	406	364	396	334	277	250	183	150	113	109	77	97	74	72	66	35	28	20	15	12	9	9	2	2	2	1		4			1	1		1								1																																	6056
AC	-	-	-	31	15	11	3	1		1																																																																																							62
AG	-	-	-	4	4	2	1	1																																																																																									12
AT	-	-	-	3696	2414	2105	1896	1922	1739	1755	1565	1424	1289	1067	900	747	654	507	381	306	242	164	117	65	50	37	14	11	5	6	6		1	1	1																																																														25087
CA	-	-	-	20	4	4		1							1																																																																																		30
CT	-	-	-	5	1	3																																																																																											9
GA	-	-	-	5	2	2			1																																																																																								10
GC	-	-	-	1																																																																																													1
GT	-	-	-	14	3	6	2	1																																																																																									26
TA	-	-	-	2933	1911	1356	1262	1081	1053	941	837	729	643	545	434	334	292	263	163	119	97	58	44	19	14	8	4	2	3	2	2	1																																																																	15150
TC	-	-	-	12	3	1	2			1																																																																																							19
TG	-	-	-	40	12	5	5	3		1				1																																																																																			67
AAC	-	-	25	17	7	4	3	1	2	1						1															1																																																																		62
AAG	-	-	13	5	5		2	1		1																																																																																							27
AAT	-	-	397	249	184	159	97	72	35	21	15	7	11	1	1	2	2	1								1																																																																							1255
ACA	-	-	5	2	2	1	1						1																																																																																				12
ACC	-	-	2	1	1																																																																																												4
ACG	-	-	1																																																																																														1
ACT	-	-	7	7	4				2																																																																																								20
AGA	-	-	10	5	1																																																																																												16
AGG	-	-	2	1																																																																																													3
AGT	-	-	4	5	2		1																																																																																										12
ATA	-	-	427	204	147	112	71	52	22	13	22	12	8	3	4	3		1	1	1									1																																																																				1104
ATC	-	-	48	20	6	4	1	1																								1																																																																	81
ATG	-	-	38	15	8	4	1	2		1	1																																																																																						70
ATT	-	-	319	211	125	116	74	56	32	13	7	8	4	4	1		2	1	1																																																																														974
CAA	-	-	7	2	1	2	1		1					1																1																																																																			16
CAC	-	-			1																																																																																												1
CAT	-	-	18	9	5	2		1	3																																																																																								38
CCA	-	-	1																																																																																														1
CCT	-	-	3																																																																																														3
CTA	-	-	9	7		1		1																																																																																									18
CTC	-	-	3	1	1																																																																																												5
CTT	-	-	7	6			2	1																																																																																									16
GAA	-	-	33	10	8	6	1	1		1		1																																																																																					61
GAC	-	-	2																																																																																														2
GAG	-	-	2																																																																																														2
GAT	-	-	43	12	11	4		2																																																																																									72
GGA	-	-		1																																																																																													1
GGT	-	-		1																																																																																													1
GTA	-	-	10	4	2		1									1																																																																																	18
GTC	-	-	1	1																																																																																													2
GTG	-	-	2	1																																																																																													3
GTT	-	-	4	5	6	3	1		1					1																																																																																			21
TAA	-	-	212	116	84	65	38	28	20	7	10	4	1	2	1		1		1					1																																																																									591
TAC	-	-	26	13	5	2	1	1																																1																																																									49
TAG	-	-	12	9	2	2		1			2										1																																																																												29
TAT	-	-	384	218	187	126	94	66	35	20	11	12	3	2			2	2			1																																																																												1163
TCA	-	-	48	18	10	2	2	2																																																																																									82
TCC	-	-	1	1	2	1																																																																																											5
TCG	-	-	2	1																																																																																													3
TCT	-	-	13	5	1	3	1	4	1																																																																																								28
TGA	-	-	16	6	4	2				1																																																																																							29
TGG	-	-	1																																																																																														1
TGT	-	-	11	3	2	5	1	3	1		1	1																							1																																																														29
TTA	-	-	315	137	116	90	62	47	27	14	13	10	4	1	3	2	1		1		1																																																																												844
TTC	-	-	34	12	6	2	3		2					1																																																																																			60
TTG	-	-	21	5	3	3	1	3	2			1																																																																																					39
AAAC	-	14	1	3	1	1																																																																																											20
AAAG	-	8	4	1	2	1																																																																																											16
AAAT	-	390	235	127	48	27	15	4	4	1	1																																																																																						852
AACA	-	1																																																																																															1
AAGA	-	5	2	2		1																																																																																											10
AAGG	-	2																																																																																															2
AAGT	-						1																																																																																										1
AATA	-	253	157	98	45	19	8	10	1	2																																																																																							593
AATC	-			2																																																																																													2
AATG	-	2	3																																																																																														5
AATT	-	5	2	1																																																																																													8
ACAA	-	1	1			1																																																																																											3
ACAT	-	19	11	2		2	1				1											1											1																				1																																												39
ACTT	-	1																																																																																															1
AGAA	-	6		3	1		1																																																																																										11
AGAT	-	1																																																																																															1
ATAA	-	404	174	87	50	19	15	5	2	2		2				1																																																																																	761
ATAC	-	69	20	10	2	6	3		2	1	2			2												2												1	1							1											1																																								123
ATAG	-	1																																																																																															1
ATCT	-	1																																																																																															1
ATGA	-	1	2																																																																																														3
ATGC	-	1																																																																																															1
ATGT	-	19	7	2		2	1	1			1																																																																																						33
ATTA	-	7		1																																																																																													8
ATTC	-	4	4	1	1		1																																																																																										11
ATTT	-	229	136	62	26	9	5	6			1																																																																																						474
CAAA	-	1																																																																																															1
CATA	-	12	5	4			1	1			1																																																																																						24
CATC	-	1																																																																																															1
CATT	-	4																																																																																															4
CTTA	-	1																																																																																															1
CTTC	-		1																																																																																														1
CTTT	-	2		1					1																																																																																								4
GAAA	-	7	5			2	1																																																																																										15
GAAT	-	2																																																																																															2
GCTA	-	1																																																																																															1
GTAT	-	16	7		1		1						2																																																																																				27
GTTT	-	3			1																						1																																																																						5
TAAA	-	159	71	28	20	1	5	1	1	1																																																																																							287
TAAC	-	1																																																																																															1
TAAT	-	7	1	1																																																																																													9
TACA	-	6	7	3	1						1		1																																																																																				19
TAGA	-	1																																																																																															1
TAGC	-	1																																																																																															1
TATC	-	2	1																																																																																														3
TATG	-	63	28	9	6	3										1	1		1												1																																																																	1	114
TATT	-	458	220	115	52	32	11	2		1				2			1																																																																																894
TCAT	-		2																																																																																														2
TGAA	-	1																																																																																															1
TGAT	-			1																																																																																													1
TGTA	-	16	6	3	6	1	1																																																																																										33
TGTT	-	5	1		1																																																																																												7
TTAA	-	4	2		1																																																																																												7
TTAG	-	1																																																																																															1
TTAT	-	264	100	61	46	10	4	5	4	1	1	1																																																																																					497
TTCA	-							1																																																																																									1
TTCT	-	5	1	1	1			1																																																																																									9
TTGA	-	1	1			1																																																																																											3
TTGC	-	1																																																																																															1
TTGT	-	2			2	1																																																																																											5
TTTA	-	294	116	62	42	15	11	1	1	2	2											1																																																																											547
TTTC	-	17	13	6	3	1											1																																																																																41
TTTG	-	17	5	1			2																													1																																																													26
AAAAC	30	12	3	1				1																																																																																									47
AAAAG	50	13	4	1																																																																																													68
AAAAT	392	192	73	21	11	5			1			1		1																																																																																			697
AAACA	6																																																																																																6
AAAGA	5	2	2	1																																																																																													10
AAAGC	1																																																																																																1
AAAGG	1																																																																																																1
AAATA	132	54	21	4	2	1	1						1																																																																																				216
AAATC	1	1	1																																																																																														3
AAATG	11	3																																																																																															14
AAATT	11	5	2		1																																																																																												19
AACAA	3		1	1	1																																																																																												6
AACAC		1																																																																																															1
AACAG	1																																																																																																1
AACAT	1																1																																																																																2
AACCA		1																																																																																															1
AAGAA	7	5		1			1																																																																																										14
AAGAG	1																																																																																																1
AAGAT	2																																																																																																2
AAGGG		1																																																																																															1
AATAA	161	37	12	2		1		1																																																																																									214
AATAC	7	4																																																																																															11
AATAG	3			1																																																																																													4
AATAT	75	31	6	3	4	1	1	1					1								1																																																																												124
AATGA	1	1																																																																																															2
AATTA	8	1																																																																																															9
AATTC	1	1	1																																																																																														3
AATTG	1	2	1																																																																																														4
AATTT	3		1																																																																																														4
ACAAA	4	1	1																																																																																														6
ACAAG		1																																																																																															1
ACAAT	1																																																																																																1
ACATC	1																																																																																																1
ACATG	1																																																																																																1
AGAAA	17	1	2																																																																																														20
AGAAG	1																																																																																																1
AGAAT	1																																																																																																1
AGGAA	2																																																																																																2
AGGGA	1																																																																																																1
AGTAT	1																																																																																																1
ATAAA	96	34	8		2	2			1																																																																																								143
ATAAC	2																																																																																																2
ATAAG	1		1																																																																																														2
ATAAT	73	17	8	4			1			1	1																																																																																						105
ATACT	1																																																																																																1
ATAGA	1																																																																																																1
ATATA	361	59	18	15	2	3	3	3	1	1							1	1				2			1																																																																								471
ATATC	2																																																																																																2
ATATG	1	2		1																																																																																													4
ATATT	55	16	6		2					1																																																																																							80
ATCAA	1																																																																																																1
ATCTA	1																																																																																																1
ATGAA	1			1																																																																																													2
ATGAG	1																																																																																																1
ATGTT	1																																																																																																1
ATTAA	8	1	1																																																																																														10
ATTAT	52	15	5	3	1	1	2	1						1	1								1																																																																										83
ATTCT	1																																																																																																1
ATTGT		1																																																																																															1
ATTTA	8	5																																																																																															13
ATTTC	22	5																																																																																															27
ATTTG	1	1	1	3																																																																																													6
ATTTT	125	38	18	3	1																																																																																												185
CAAAA	1		1										1																																																																																				3
CAAAG	1																																																																																																1
CAATA	1																																																																																																1
CAATT	1																																																																																																1
CACAT	1																																																																																																1
CACCA	1																																																																																																1
CATAA	2																																																																																																2
CATAT	3																																																																																																3
CATCA	4																																																																																																4
CATTA	1																																																																																																1
CATTC	1																																																																																																1
CATTT	2																																																																																																2
CCACA	2																																																																																																2
CTATT		1		1																																																																																													2
CTTTC	2		1																																																																																														3
CTTTT	16	2	2																																																																																														20
GAAAA	28	10	2	3	1	1	1																																																																																										46
GAAAG	1																																																																																																1
GAAAT	5	1																																																																																															6
GAACT	1																																																																																																1
GAATT			1																																																																																														1
GATAT	2																																																																																																2
GATTG	1																																																																																																1
GATTT	1																																																																																																1
GGAAT	1																																																																																																1
GTATA	1																																																																																																1
GTGTT	1																																																																																																1
GTTTT	1		2																																																																																														3
TAAAA	80	22	11	5		1	1																																																																																										120
TAAAG	1																																																																																																1
TAAAT	11	1	1																																																																																														13
TAAGT		1	1																																																																																														2
TAATA	28	7	4	1								2																																																																																					42
TAATG	1																																																																																																1
TAATT	5	2																																																																																															7
TACAT	1																																																																																																1
TATAA	44	12	2	1			1	1						1																																																																																			62
TATAC	1																																																																																																1
TATAT	293	47	18	10	1		2	1		1	1	3					1			1																																																																													379
TATCA	1																																																																																																1
TATGT	1																																																																																																1
TATTA	81	28	13	3	2	2	1		2	1		1																																																																																					134
TATTC	3																																																																																																3
TATTG	1	4	1																																																																																														6
TATTT	146	43	29	4	3								1																																																																																				226
TCAAA	1																																																																																																1
TCATA	2		1																																																																																														3
TCATT	2																																																																																																2
TCTCT	1																																																																																																1
TCTTT	6																																																																																																6
TGAAA		1	1																																																																																														2
TGATA	2	1	2	1																																																																																													6
TGATG	2																																																																																																2
TGATT	1																																																																																																1
TGTAT	2	1	1																																																																																														4
TGTTA		1																																																																																															1
TGTTC	1																																																																																																1
TGTTG	1																																																																																																1
TGTTT	6	3		1																																																																																													10
TTAAA	3	2	2																																																																																														7
TTAAT	9	1																																																																																															10
TTATA	70	12	4	5		1																			1	1																																																																							94
TTATT	213	61	30	10	1	1																																																																																											316
TTCAT	1																																																																																																1
TTCCT		1																																																																																															1
TTCTA	1																																																																																																1
TTCTG	1																																																																																																1
TTCTT	20	4	1		1																																																																																												26
TTGAT		1																																																																																															1
TTGGC	1																																																																																																1
TTGTA	2																																																																																																2
TTGTT	4	2	1																																																																																														7
TTTAA	11	4			1																																																																																												16
TTTAT	191	69	21	6	1			1																																																																																									289
TTTCA	4	3																																																																																															7
TTTCC	4	2	1																																																																																														7
TTTCT	23	3	2	1																																																																																													29
TTTGA	2																																																																																																2
TTTGC	2																																																																																																2
TTTGT	9	2	1																																																																																														12
TTTTA	275	86	37	16	5	4																																																																																											423
TTTTC	59	21	7	1	3																																																																																												91
TTTTG	21	9	1	1																																																																																													32
AAAAAC	7	3	1																																																																																														11
AAAAAG	35	15	2																																																																																														52
AAAAAT	91	24	5																																																																																														120
AAAACA	4			1																																																																																													5
AAAAGA	14	4																																																																																															18
AAAAGG	1																																																																																																1
AAAATA	41	15	1																																																																																														57
AAAATC	1																																																																																																1
AAAATG	6	1	2																																																																																														9
AAAATT	4			1																																																																																													5
AAACAA	3			1																																																																																													4
AAACAC		1																																																																																															1
AAACAT	2			1																																																																																													3
AAACTC	1																																																																																																1
AAAGAA	7	3	2																																																																																														12
AAAGAG	1																																																																																																1
AAAGAT	4																																																																																																4
AAAGGA			1	1	1																																																																																												3
AAAGGT	1																																																																																																1
AAATAA	30	6																																																																																															36
AAATAC	2		1																																																																																														3
AAATAG	2																																																																																																2
AAATAT	46	10	6			1																																																																																											63
AAATCA	1																																																																																																1
AAATGA	1	3																																																																																															4
AAATGC	1																																																																																																1
AAATGG	1																																																																																																1
AAATGT	1																																																																																																1
AAATTA	1																																																																																																1
AAATTT	1																																																																																																1
AACAAA	2																																																																																																2
AACAAG	1																																																																																																1
AACAAT	2																																																																																																2
AACACA	1																																																																																																1
AACATA	1	1																																																																																															2
AACTAT	1																																																																																																1
AAGAAA	11	4	2		1																																																																																												18
AAGAGC					1																																																																																												1
AAGATG	2																																																																																																2
AAGGAA	2						1																																																																																										3
AAGGAC	1																																																																																																1
AAGGAT	1																																																																																																1
AAGGTC				1																																																																																													1
AATAAA	18	6	3																																																																																														27
AATAAC	4																																																																																																4
AATAGT	2	1	1																																																																																														4
AATATA	35	7	4																																																																																														46
AATATC	1																																																																																																1
AATATT	2	1																																																																																															3
AATCAG			1																																																																																														1
AATCAT		1																																																																																															1
AATGAA	1	1																																																																																															2
AATGAT	7		1																																																																																														8
AATGTA	1		1					1																																																																																									3
AATGTT				1																																																																																													1
AATTAA	1																																																																																																1
AATTAC			1																																																																																														1
AATTAT	1	1																																																																																															2
AATTCT	1																																																																																																1
AATTTT	1																																																																																																1
ACAAAA	2						1																																																																																										3
ACAAAC	2	1	1																																																																																														4
ACAAAT	1	2		1																																																																																													4
ACAAGA	2																																																																																																2
ACAATA	1																																																																																																1
ACACAT	1	1																																																																																															2
ACATAA	2	1																																																																																															3
ACATAT	3	2	1																																																																																														6
ACATGT	1																																																																																																1
ACATTA	1																																																																																																1
ACATTG	1																																																																																																1
ACATTT	1																																																																																																1
ACCAAG	1																																																																																																1
ACGATG		1																																																																																															1
ACTAAC			1																																																																																														1
ACTATT	3																																																																																																3
AGAAAA	3	4																																																																																															7
AGAAAC		1																																																																																															1
AGAAAT		1																																																																																															1
AGAAGG		1																																																																																															1
AGAATA	1																																																																																																1
AGAGAA	1																																																																																																1
AGAGAT	1																																																																																																1
AGATAA	2																																																																																																2
AGATAT	2																																																																																																2
AGGAAA	2																																																																																																2
AGGAAG		1																																																																																															1
AGGAGA		1																																																																																															1
AGGAGC	1																																																																																																1
AGGTAA	1																																																																																																1
AGGTGG	1																																																																																																1
AGTAAT	1																																																																																																1
AGTATT	1																																																																																																1
ATAAAA	16	1	1																																																																																														18
ATAAAC	4	2	1	1				1																																																																																									9
ATAAAG	2																																																																																																2
ATAAAT	90	24	2		3																																																																																												119
ATAACA		1																																																																																															1
ATAAGA	1																																																																																																1
ATAATC		1																																																																																															1
ATAATG	4	3																																																																																															7
ATAATT	10	2																																																																																															12
ATACAC	1		1																																																																																														2
ATACAT	4	5	1																																																																																														10
ATAGTA	1	1																																																																																															2
ATAGTC	1																																																																																																1
ATATAA	69	10	1	1																																																																																													81
ATATAC	7	2	3						1																																																																																								13
ATATAG	2																																																																																																2
ATATGC	2																																																																																																2
ATATGT	4	2	1																																																																																														7
ATATTA	1	1																																																																																															2
ATATTC		2																																																																																															2
ATATTT	21	7	1		1																																																																																												30
ATCAAG	1																																																																																																1
ATCAGC	1																																																																																																1
ATCATA	1																																																																																																1
ATCATG			1																																																																																														1
ATCATT	5	1	1																																																																																														7
ATCGTC	1																																																																																																1
ATCTAT	1																																																																																																1
ATCTTC	1																																																																																																1
ATCTTT	1																																																																																																1
ATGAAA		1																																																																																															1
ATGAAC						1																																																																																											1
ATGAAG	1																																																																																																1
ATGATA	8	2																																																																																															10
ATGATC	2																																																																																																2
ATGGTG		1																																																																																															1
ATGTAA	3	1																																																																																															4
ATGTAT	3																																																																																																3
ATGTTC	1																																																																																																1
ATGTTG	1																																																																																																1
ATGTTT		1																																																																																															1
ATTAAC	1																																																																																																1
ATTAAT	2																																																																																																2
ATTACT	1		1																																																																																														2
ATTAGC		1																																																																																															1
ATTATA	9																																																																																																9
ATTATC	6	1		1																																																																																													8
ATTGTA	1																																																																																																1
ATTGTT	1		1																																																																																														2
ATTTAA	3	1																																																																																															4
ATTTAC	1	1																																																																																															2
ATTTAT	21	4	1																																																																																														26
ATTTGC	1																																																																																																1
ATTTTA	2	1																																																																																															3
ATTTTC	8	3	3																																																																																														14
ATTTTT	28	5	3	1		1																																																																																											38
CAAAAA	1																																																																																																1
CAACAG	1																																																																																																1
CAATAA	1	1																																																																																															2
CAATAC	1																																																																																																1
CAATGA	1																																																																																																1
CACCTC		1																																																																																															1
CATAAA	2																																																																																																2
CATATA	3																																																																																																3
CATCAA	1																																																																																																1
CATCAC	1																																																																																																1
CATCCC	1																																																																																																1
CATGAG	1																																																																																																1
CATGAT	1																																																																																																1
CATTAA	1																																																																																																1
CATTAT	2				1																																																																																												3
CATTCA	1																																																																																																1
CATTTC		1																				1																																																																											2
CATTTT			1																																																																																														1
CCATTA	6																																																																																																6
CCATTT	1																																																																																																1
CCTAAA	13																																																																																																13
CCTTAT	1																																																																																																1
CCTTTA	1																																																																																																1
CGATGA	1																																																																																																1
CGTTTC	1																																																																																																1
CTATTA	1																																																																																																1
CTCCCC	1																																																																																																1
CTCTTT		1																																																																																															1
CTTATT	1																																																																																																1
CTTCAT	1																																																																																																1
CTTCTC	1																																																																																																1
CTTGTT	1																																																																																																1
CTTTAC	1																																																																																																1
CTTTTC	3																																																																																																3
CTTTTT	7																																																																																																7
GAAAAA	9	6	1	2																																																																																													18
GAAAAG	2	2																																																																																															4
GAAAAT	2	2																																																																																															4
GAAAGA	2																																																																																																2
GAAATA	2			1																																																																																													3
GAAGAC	1																																																																																																1
GAAGAT		1																																																																																															1
GAAGTA	1																																																																																																1
GAATAA	1																																																																																																1
GAATAT		2																																																																																															2
GACGAA	1																																																																																																1
GACGAT	1																																																																																																1
GACTCA		1																																																																																															1
GAGATA	1																																																																																																1
GAGGAA	1																																																																																																1
GATAAA	2																																																																																																2
GATAAC		1																																																																																															1
GATAAT	2																																																																																																2
GATAGA	1																																																																																																1
GATGAA	4	1																																																																																															5
GATGAC	1	1																																																																																															2
GATGGT	1																																																																																																1
GGAAAA	2																																																																																																2
GGAAAG		1																																																																																															1
GGAAAT				1																																																																																													1
GGACAT	1																																																																																																1
GGTGAA	1																																																																																																1
GGTGAT	1																																																																																																1
GGTTTA	6	3																																																																																															9
GTAAAA	2																																																																																																2
GTAAAT		1																																																																																															1
GTAATA	1				1																																																																																												2
GTAATG	1																																																																																																1
GTATAT	2																																																																																																2
GTCAAC	1																																																																																																1
GTCTTC		1																																																																																															1
GTGAAG	1																																																																																																1
GTGATG	1																																																																																																1
GTGTTG	2																																																																																																2
GTTAAA	1																																																																																																1
GTTATT	1																																																																																																1
TAAAAA	18	7																																																																																															25
TAAAAG	2																																																																																																2
TAAAAT	2	1	1																																																																																														4
TAAACA	3					1																																																																																											4
TAAATA	14	6	3																																																																																														23
TAAATG	5	1																																																																																															6
TAAATT	1																																																																																																1
TAACAA	1				1																																																																																												2
TAATAC	1																																																																																																1
TAATAG	3	3																																																																																															6
TAATAT	1																																																																																																1
TAATGA	4		1																																																																																														5
TAATGT	1																																																																																																1
TAATTA	4	1																																																																																															5
TAATTG	1	1																																																																																															2
TAATTT	1	1																																																																																															2
TACATA	1																																																																																																1
TACATT		1																																																																																															1
TACTAT	3																																																																																																3
TAGAAC		1																																																																																															1
TAGATA	1																																																																																																1
TAGTAA	1																																																																																																1
TATAAA	16	4																																																																																															20
TATAAT	5	3																																																																																															8
TATACA	1								1																																																																																								2
TATATC	4			1																																																																																													5
TATATG	7	2																																																																																															9
TATATT	82	13	5	3																																																																																													103
TATCAT	1																																																																																																1
TATCGT	1																																																																																																1
TATCTT				1																																																																																													1
TATGTA	4	1	1																																																																																														6
TATGTG			1	1																																																																																													2
TATGTT	3	2	1																																																																																														6
TATTAA	3	1																																																																																															4
TATTAC	10	6																																																																																															16
TATTGT	1	2	1																																																																																														4
TATTTA	71	14	2		1																																																																																												88
TATTTC		1																																																																																															1
TATTTG	2	2																																																																																															4
TATTTT	32	15	1																																																																																														48
TCAAGA		1																																																																																															1
TCAAGC		1																																																																																															1
TCACAC		1																																																																																															1
TCACCT	1																																																																																																1
TCATAA				1																																																																																													1
TCATAT	1																																																																																																1
TCATCG		1																																																																																															1
TCATCT	1									1																																																																																							2
TCATTA		1																																																																																															1
TCATTT	1	1																																																																																															2
TCCATT	1																																																																																																1
TCCTCA	1																																																																																																1
TCCTTT	1	1																																																																																															2
TCGTCT	1																																																																																																1
TCGTGT				1																																																																																													1
TCTATA	2																																																																																																2
TCTCCT			1																																																																																														1
TCTCTA	1																																																																																																1
TCTCTT	1		1																																																																																														2
TCTGTA	1																																																																																																1
TCTTAT	1																																																																																																1
TCTTCA	2																																																																																																2
TCTTCC	2	1																																																																																															3
TCTTGT	1																																																																																																1
TCTTTA	2	1																																																																																															3
TCTTTC	3	1	2																																																																																														6
TCTTTG	1		1																																																																																														2
TCTTTT	7	1		1																																																																																													9
TGAAAA	1	1																																																																																															2
TGAAAT		1																																																																																															1
TGAACA	1																																																																																																1
TGAATC	1																																																																																																1
TGACGA	1																																																																																																1
TGATTA	1	1																																																																																															2
TGCTGG	1																																																																																																1
TGGAGG	1																																																																																																1
TGGATG		1																																																																																															1
TGTAAA	3	1																																																																																															4
TGTATA	3																																																																																																3
TGTATG			1																																																																																														1
TGTATT	2																																																																																																2
TGTGCT	1																																																																																																1
TGTGTA	2																																																																																																2
TGTTCA	1	1	1																																																																																														3
TGTTGA	1																																																																																																1
TGTTTA	3	1																																																																																															4
TTAAAA		1						1																																																																																									2
TTAATA	1																																																																																																1
TTAATG	1																																																																																																1
TTACAT	1																																																																																																1
TTACTA	1																																																																																																1
TTACTT		1																																																																																															1
TTATAG	1																																																																																																1
TTATAT	14	1	2		2																																																																																												19
TTATCA	1																																																																																																1
TTATCC	2																																																																																																2
TTATCT	5																																																																																																5
TTATGT				1																																																																																													1
TTATTC	3																																																																																																3
TTATTG	4	3	1	1																																																																																													9
TTATTT	26	5																																																																																															31
TTCATC	1																																																																																																1
TTCATG	1																																																																																																1
TTCATT	1																																																																																																1
TTCTCC		1																																																																																															1
TTCTTA	3																																																																																																3
TTCTTG	1																																																																																																1
TTCTTT	11	2																																																																																															13
TTGATG		1																																																																																															1
TTGATT	1																																																																																																1
TTGTCC	1																																																																																																1
TTGTTA	1	1																																																																																															2
TTGTTC	1	1																																																																																															2
TTGTTT	1																																																																																																1
TTTAAA	1																																																																																																1
TTTAAT	4																																																																																																4
TTTAGG	2																																																																																																2
TTTATA	32	4	2	1																																																																																													39
TTTATC	2																																																																																																2
TTTATG	10	3	2																																																																																														15
TTTATT	31	10	1		1										1																																																																																		44
TTTCAT	1	1																																																																																															2
TTTCCC	1																																																																																																1
TTTCCT		2																																																																																															2
TTTCTC		2																																																																																															2
TTTCTG	1																																																																																																1
TTTCTT	16	5	3																																																																																														24
TTTGTA	2																																																																																																2
TTTGTC	1																																																																																																1
TTTGTG	1	1																																																																																															2
TTTGTT	4	1		1																																																																																													6
TTTTAA	3	2	2																																																																																														7
TTTTAC	2																																																																																																2
TTTTAT	27	3		1																																																																																													31
TTTTCA	1	2																																																																																															3
TTTTCC	5	1																																																																																															6
TTTTCT	10	3	2																																																																																														15
TTTTGA	1																																																																																																1
TTTTGT	3	1		1																																																																																													5
TTTTTA	61	15	3																																																																																														79
TTTTTC	44	10	4	4	2	1																																																																																											65
TTTTTG	4	4		1																																																																																													9

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1463	1197	1105	1024	982	865	776	759	672	599	480	343	282	236	206	173	206	167	148	125	73	49	39	27	21	14	13	4	5	3	2	5	4	3		2	1		1								1																																	12075
AC/GT	-	-	-	105	34	26	10	6		2				1	1																																																																																		185
AG/CT	-	-	-	26	10	8	3	1	1	1																																																																																							50
AT/AT	-	-	-	6629	4325	3461	3158	3003	2792	2696	2402	2153	1932	1612	1334	1081	946	770	544	425	339	222	161	84	64	45	18	13	8	8	8	1	1	1	1																																																														40237
CG/CG	-	-	-	1																																																																																													1
AAC/GTT	-	-	73	34	21	18	8	7	7	1	1	2	1	2		1														1	1				1																																																														179
AAG/CTT	-	-	110	43	21	11	9	7	3	2		1		1																																																																																			208
AAT/ATT	-	-	2054	1135	843	668	436	321	171	88	78	53	31	13	10	7	8	5	4	1	2			1		1			1																																																																				5931
ACC/GGT	-	-	6	3	2																																																																																												11
ACG/CGT	-	-	6	2																																																																																													8
ACT/AGT	-	-	68	45	15	5	3	3	2		2					1					1																			1																																																									146
AGG/CCT	-	-	11	4	3	1																																																																																											19
ATC/ATG	-	-	211	80	44	18	4	8	3	2	1																					1																																																																	372
AAAC/GTTT	-	44	8	4	5	3	2																				1									1																																																													68
AAAG/CTTT	-	50	25	14	7	5	2	1	1								1																																																																																106
AAAT/ATTT	-	2451	1209	640	329	132	74	34	13	10	5	3		2		1	1					1																																																																											4905
AACT/AGTT	-	2																																																																																															2
AAGC/CTTG	-	1																																																																																															1
AAGG/CCTT	-	2	1																																																																																														3
AAGT/ACTT	-	2					1																																																																																										3
AATC/ATTG	-	1	1	3		1																																																																																											6
AATG/ATTC	-	14	11	1	1		1	1																																																																																									29
AATT/AATT	-	23	5	3	1																																																																																												32
ACAT/ATGT	-	220	91	33	16	14	8	2	2	1	6		3	2		1	1		1			1				2					1		1					1	1							1							1				1																																							1	412
AGAT/ATCT	-	6	1																																																																																														7
AGCT/AGCT	-	2																																																																																															2
ATCC/ATGG	-	1																																																																																															1
ATGC/ATGC	-	1																																																																																															1
AAAAC/GTTTT	85	29	11	4	1			1					1																																																																																				132
AAAAG/CTTTT	231	61	22	8	5	1	2																																																																																										330
AAAAT/ATTTT	1811	636	260	71	26	15	2	2	2			1	2	1																																																																																			2829
AAACC/GGTTT		1																																																																																															1
AAAGC/CTTTG	4																																																																																																4
AAAGG/CCTTT	10	3	2																																																																																														15
AAAGT/ACTTT	1																																																																																																1
AAATC/ATTTG	8	3	2	3																																																																																													16
AAATG/ATTTC	49	14	1	1																																																																																													65
AAATT/AATTT	77	22	7		2																																																																																												108
AACAC/GTGTT	2	1																																																																																															3
AACAG/CTGTT	3																																																																																																3
AACAT/ATGTT	7	1															1																																																																																9
AACTG/AGTTC	1																																																																																																1
AACTT/AAGTT		1	1																																																																																														2
AAGAC/CTTGT		1																																																																																															1
AAGAG/CTCTT	3																																																																																																3
AAGAT/ATCTT	3		1																																																																																														4
AAGCC/CTTGG	1																																																																																																1
AAGGG/CCCTT	1	1																																																																																															2
AATAC/ATTGT	14	10	2																																																																																														26
AATAG/ATTCT	10	1		2																																																																																													13
AATAT/ATATT	1132	244	84	45	12	8	11	7	3	5	2	6	1	2	1		2	1		1	1	2	1		2	1																																																																							1574
AATCC/ATTGG	1																																																																																																1
AATCT/AGATT	1																																																																																																1
AATGG/ATTCC	2																																																																																																2
AATGT/ACATT	3																																																																																																3
AATTC/AATTG	3	3	3																																																																																														9
ACACC/GGTGT	3																																																																																																3
ACATC/ATGTG	8																																																																																																8
ACATG/ATGTC	1																																																																																																1
ACTAT/AGTAT	4																																																																																																4
AGATG/ATCTC	1																																																																																																1
ATATC/ATATG	13	3	3	2																																																																																													21
AAAAAC/GTTTTT	31	9	1	5			1																																																																																										47
AAAAAG/CTTTTT	174	57	16	7	3	1																																																																																											258
AAAAAT/ATTTTT	419	112	18	2	1	1									1																																																																																		554
AAAAGG/CCTTTT	18	6	1	1	1		1																																																																																										28
AAAAGT/ACTTTT	6	1																																																																																															7
AAAATC/ATTTTG	4																																																																																																4
AAAATG/ATTTTC	23	16	6																																																																																														45
AAAATT/AATTTT	19	6	3	1				1																																																																																									30
AAACAC/GTGTTT	4	3	1																																																																																														8
AAACAG/CTGTTT	1	1																																																																																															2
AAACAT/ATGTTT	30	11	4	3		1		1																																																																																									50
AAACCT/AGGTTT	21	3																																																																																															24
AAACGG/CCGTTT	1																																																																																																1
AAACTC/AGTTTG	1																																																																																																1
AAAGAC/CTTTGT	2		1																																																																																														3
AAAGAG/CTCTTT	8	4	3																																																																																														15
AAAGAT/ATCTTT	20	1		1																																																																																													22
AAAGGG/CCCTTT	1	1																																																																																															2
AAAGGT/ACCTTT	4																																																																																																4
AAAGTT/AACTTT	1																																																																																																1
AAATAC/ATTTGT	9	4	1	1																																																																																													15
AAATAG/ATTTCT	4	2		1																																																																																													7
AAATAT/ATATTT	511	104	29	5	7	1																																																																																											657
AAATGC/ATTTGC	2																																																																																																2
AAATGG/ATTTCC	3	1		1																		1																																																																											6
AAATGT/ACATTT	16	6	1					1																																																																																									24
AAATTG/AATTTC		1																																																																																															1
AAATTT/AAATTT	6	1																																																																																															7
AACAAG/CTTGTT	7	1																																																																																															8
AACAAT/ATTGTT	17	8	3	1	1																																																																																												30
AACACC/GGTGTT	2																																																																																																2
AACACG/CGTGTT				1																																																																																													1
AACACT/AGTGTT			1																																																																																														1
AACAGC/CTGTTG	1																																																																																																1
AACATC/ATGTTG	3	1																																																																																															4
AACATG/ATGTTC	4	1	1			1																																																																																											7
AACATT/AATGTT	5			1																																																																																													6
AACGAT/ATCGTT	1	1																																																																																															2
AACGTC/ACGTTG	1																																																																																																1
AACTAG/AGTTCT		1																																																																																															1
AACTAT/AGTTAT	2																																																																																																2
AAGAAT/ATTCTT	11																																																																																																11
AAGACC/CTTGGT	1																																																																																																1
AAGACG/CGTCTT	3	1																																																																																															4
AAGAGC/CTCTTG					1																																																																																												1
AAGAGG/CCTCTT	3	2																																																																																															5
AAGATC/ATCTTG	1	1																																																																																															2
AAGATG/ATCTTC	13	2								1																																																																																							16
AAGCAC/CTTGTG	1																																																																																																1
AAGCTC/AGCTTG		1																																																																																															1
AAGGAC/CCTTGT	2																																																																																																2
AAGGAG/CCTTCT	1	3	1																																																																																														5
AAGGAT/ATCCTT	4																																																																																																4
AAGGTC/ACCTTG				1																																																																																													1
AAGGTG/ACCTTC	3																																																																																																3
AAGTAG/ACTTCT	1																																																																																																1
AATACC/ATTGGT	1																																																																																																1
AATACT/AGTATT	2																																																																																																2
AATAGT/ACTATT	28	11	2		1																																																																																												42
AATATC/ATATTG	1																																																																																																1
AATATG/ATATTC	1	4																																																																																															5
AATATT/AATATT	10	3																																																																																															13
AATCAG/ATTCTG			1																																																																																														1
AATCAT/ATGATT	2	3		1																																																																																													6
AATCTG/AGATTC	1																																																																																																1
AATGAC/ATTGTC	1																																																																																																1
AATGAT/ATCATT	40	8	3	1	1																																																																																												53
AATGCT/AGCATT		1																																																																																															1
AATGGT/ACCATT	7																																																																																																7
AATGTC/ACATTG	1																																																																																																1
AATGTG/ACATTC	1																																																																																																1
AATTAC/AATTGT	2	1	1																																																																																														4
AATTAG/AATTCT	1																																																																																																1
AATTAT/AATTAT	29	7																																																																																															36
ACACAT/ATGTGT	4	1	3	1																																																																																													9
ACACTC/AGTGTG		1																																																																																															1
ACAGAT/ATCTGT	1																																																																																																1
ACATAT/ATATGT	42	14	7						2																																																																																								65
ACATCC/ATGTGG		1																																																																																															1
ACATGG/ATGTCC	1																																																																																																1
ACATGT/ACATGT	1																																																																																																1
ACCAGC/CTGGTG	1																																																																																																1
ACCATC/ATGGTG	4	1																																																																																															5
ACCTCC/AGGTGG	2	1																																																																																															3
ACGATG/ATCGTC	5	3																																																																																															8
ACTATG/AGTCAT	1																																																																																																1
ACTCAG/AGTCTG		1																																																																																															1
AGAGAT/ATCTCT	4																																																																																																4
AGATAT/ATATCT	12			1																																																																																													13
AGCAGG/CCTGCT	1																																																																																																1
AGCATC/ATGCTG	1																																																																																																1
AGCATG/ATGCTC	1																																																																																																1
AGGATG/ATCCTC	1																																																																																																1
AGGGGG/CCCCCT	1																																																																																																1
ATATGC/ATATGC	2																																																																																																2
ATCATG/ATCATG	3		1																																																																																														4
ATCCCC/ATGGGG	1																																																																																																1
