Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCA_964019475.1/fasta/hub_GCA_964019475.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              8
Total size of examined sequences (bp):           11643946
Total number of identified SSRs:                 80
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	34
4	2
5	20
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4	2	6
GC	-	-	-	2		2
CAG	-	-	2			2
CCA	-	-	2			2
CCG	-	-	6			6
CGC	-	-	2			2
CGG	-	-	4			4
CTG	-	-	2			2
GAC	-	-	2			2
GCA	-	-	2			2
GCC	-	-	4	2		6
GCG	-	-	2			2
GGC	-	-	2			2
GTC	-	-	2			2
TTAC	-	2				2
AATAA	2					2
AGGGC			2			2
CCACG	2					2
CCCGG	2					2
CCGCG	2					2
GCGGC	2					2
GGCGC	2					2
TATTG	2					2
TTTAT	2					2
TTTTA	2					2
CGCCAG	2					2
CGGTAT	2					2
CTGGTG	2					2
GAAGTC	2					2
GCGCCT	2					2
GCTCCG		2				2
GTGGAA	2					2
TCTTCG	2					2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	6	2	8
ACC/GGT	-	-	2			2
ACG/CGT	-	-	4			4
AGC/CTG	-	-	6			6
CCG/CGG	-	-	20	2		22
AAGT/ACTT	-	2				2
AAAAT/ATTTT	6					6
AATAC/ATTGT	2					2
ACGCC/CGTGG	2					2
AGGGC/CCCTG			2			2
CCCGG/CCGGG	2					2
CCGCG/CGCGG	6					6
AAGACG/CGTCTT	2					2
AAGTCG/ACTTCG	2					2
AAGTGG/ACTTCC	2					2
ACCAGC/CTGGTG	2					2
ACCGAT/ATCGGT	2					2
AGCCGG/CCGGCT		2				2
AGCGCC/CGCTGG	2					2
AGGCGC/CCTGCG	2					2
