Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_947561635.1/fasta/hub_GCA_947561635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              14513
Total size of examined sequences (bp):           82619235
Total number of identified SSRs:                 35981
Number of SSR containing sequences:              3903
Number of sequences containing more than 1 SSR:  2925
Number of SSRs present in compound formation:    14650


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4436
2	7940
3	5463
4	2317
5	14570
6	1255

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	420	335	264	225	193	159	109	93	83	66	46	26	35	19	10	12	8	1	4	1	7	3	4	5	1	2	2	1		3		1	1	1						2			1	2			1									1		1						1													1	1																														2151
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	4	2	3	4	2	2		1						2	1					1	1	1					1	1						1		1	1	1																1															1																																						36
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	3	1	1	3	2	3	1	3	3			2		1		1			1		1	1										1										1																																												1							1	1												1	38
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	413	354	246	247	201	172	130	98	85	59	53	35	29	13	7	12	8	5	6	9	5	1	4		2	1	1	1	1	1	3		1					3																	1																							1																												1	2	2211
AC	-	-	-	284	178	127	104	64	59	41	40	16	21	14	17	10	14	6	5	9	2	7	2	8	6	1	1	3			3	1	1	1	1	1	1				1		1		1					1								1		2	1																																																																1056
AG	-	-	-	190	142	128	85	72	36	25	20	8	9	7	3	5	1	1	3	1	1			1																																																																																																					738
AT	-	-	-	488	315	220	163	108	99	65	38	25	21	16	10	4	2	2	1	1		1	1	1	1																																																																																																				1582
CA	-	-	-	92	44	34	23	21	18	14	10	11	5	3	3	1	4	2	2	1	2	2		2		1		1	4		1	3	1		1	1	1		1	2	1	1									1										3																																																																317
CG	-	-	-	1	2																																																																																																																								3
CT	-	-	-	134	76	73	49	36	28	14	9	7	4	6	2	2			1																																																																																																										441
GA	-	-	-	124	67	63	36	29	22	14	8	4	6	1	1	3				1																																																																																																									379
GT	-	-	-	103	66	51	31	17	8	8	7	2	6	2	5		5	2	1	2		1							1			1						1	1												1																																																																										322
TA	-	-	-	396	226	181	115	80	75	43	23	24	15	7	7	3	1	2		1	1	1	2	1																																																																																																					1204
TC	-	-	-	220	141	100	75	69	34	20	13	15	6	10	3	1	1		2	3					1																																																																																																				714
TG	-	-	-	321	214	137	105	78	56	50	34	24	25	12	21	9	10	8	7	10	3	7	6	1	4	7	4	6	3	2	4						2	1	1	2			2		1	1						1								2	2	1																																																															1184
AAC	-	-	42	17	11	7	5	1		1	2	1																			1																																																																																														88
AAG	-	-	16	2	3		1																																																																																																																						22
AAT	-	-	196	74	33	17	9	12	7	9	8	7	4	4	5	5	9	11	3	7	5	8	1	4	1	2	2				3	5			2	2		1		2																																																																																					458
ACA	-	-	23	18	5	5	6	1		1	2		1						1								1														1																																																																																				65
ACC	-	-	8	7	1	2	1		1	1																																																																																																																			21
ACG	-	-		2																																																																																																																									2
ACT	-	-	28	14	9	5	2	1	1	1					1		3																							2																																																																																					67
AGA	-	-	7	4	4					1																																																																																																																			16
AGC	-	-	4	3	2	1																																																																																																																							10
AGG	-	-	1	1	3																																																																																																																								5
AGT	-	-	33	18	7	5	7	3	5			1	2	2	2		1															1								2																																																																																					89
ATA	-	-	122	53	19	15	7	8	7	2	2	5	3	3	1	6	3	3	5	4	3	3	2	2	7	4	3	1	3	1		1	1	1	1			1	1																																																																																						303
ATC	-	-	105	50	27	20	10	9	8	4		4		1	1	1	1	2	1			1	1					1																																																																																																	247
ATG	-	-	73	41	27	7	11	3	1	6	4	1		3	1		1			1		1	1						1	1																																																																																															184
ATT	-	-	183	95	36	30	15	9	9	5	5	5	5	8	9	4	5	5	4	7	5	2	2		5	7	4			1	1	1	1	1	2	1	1		2	5																																																																																					480
CAA	-	-	58	23	19	7	7	5	1	2	3		2			1			2		1					1						1																																																																																													133
CAC	-	-	21	8	2	1	3	2	1		1																																																																																																																		39
CAG	-	-	10	12	4	2				1																																																																																																																			29
CAT	-	-	64	26	25	10	8	9	2	1		2	1			3	1		1		1			1					1																																																																																																156
CCA	-	-	14	3	4	2	1	1	1	1					1																																																																																																														28
CCT	-	-	2	5		2		1	1																																																																																																																				11
CGA	-	-	2						1																																																																																																																				3
CGC	-	-	1																																																																																																																										1
CGT	-	-	1	1																																																																																																																									2
CTA	-	-	32	18	12	3	2	2	1	2		1												1																																																																																																					74
CTC	-	-	11	2	2	1	1		1	1	1							1																																																																																																											21
CTG	-	-	17	8	4																																																																																																																								29
CTT	-	-	17	8	2	2	1																																																																																																																						30
GAA	-	-	20	5																																																																																																																									25
GAC	-	-	2																																																																																																																										2
GAG	-	-	7	5		1	3																																																																																																																						16
GAT	-	-	61	34	14	10	5	1	2	2	1	1			2	1						1											1																																																																																												136
GCA	-	-	15	6	2	1																																																																																																																							24
GCC	-	-		1																																																																																																																									1
GCT	-	-	7	3	1		1																																																																																																																						12
GGA	-	-	8			1		1																																																																																																																					10
GGC	-	-	1																																																																																																																										1
GGT	-	-	24	9	3		1																																																																																																																						37
GTA	-	-	21	15	12	6	6	1	3	2	1		2	1	1			1		1					1															1																																																																																					75
GTC	-	-	2																																																																																																																										2
GTG	-	-	26	7	3	1	1	1		1		1																																																																																																																	41
GTT	-	-	26	11	6	2		5							1						1																																																																																																								52
TAA	-	-	170	94	44	21	10	7	8	4	6	8	11	7	4	6	9	4	4	10	5	7	5	5	6	7	1	1	3	1	3	4		2	3	1	2	4	2	3																																																																																					492
TAC	-	-	47	21	16	10	3	2	1	3				1				1				2																																																																																																							107
TAG	-	-	36	26	13	8	5	5	1	1			1	1		1		1			1	1																		1																																																																																					102
TAT	-	-	137	58	27	18	5	7	4	8	7	6	3	6	7	4	7	4	7	3	5	1	4	4	2	2	4	4		1	2		1	1	1			1	1	3																																																																																					355
TCA	-	-	54	28	22	10	6	2	3	1	2	1	2	1	2			1	2		1		1																																																																																																						139
TCC	-	-	21	10	5				1		1					1				2																																																																																																									41
TCG	-	-	3		1																																																																																																																								4
TCT	-	-	8	4	1																																																																																																																								13
TGA	-	-	83	35	21	12	8	6	1	2	2	1		3	1		2			1		3			1	1				1	2		2																																																																																												188
TGC	-	-	19	5	5	3	2																																																																																																																						34
TGG	-	-	53	19	8	4			3																																																																																																																				87
TGT	-	-	41	23	21	8	9	1	2	2		1				1		1		1																																																																																																									111
TTA	-	-	196	147	31	23	12	14	4	12	6	7	3	9	7	7	11	5	6	5	12	9	6	9	8	4	4	1	5	4	3	3	5	1	1	1		2	2	2																																																																																					587
TTC	-	-	20	6	5		1		1							1																																																																																																													34
TTG	-	-	45	29	22	9	7	2		4		1	1	2																																																																																																															122
AAAC	-	31	4	2	1	1				1																																																																																																																			40
AAAG	-	23	2								1																																																																																																																		26
AAAT	-	60	10																																																																																																																										70
AACA	-	9	2					1																																																																																																																					12
AACC	-	1			1																																																																																																																								2
AAGA	-	8	4	1																																																																																																																									13
AAGC	-	4																																																																																																																											4
AAGG	-	3	4																																																																																																																										7
AAGT	-	7	1																																																																																																																										8
AATA	-	27	2		3				1																																																																																																																				33
AATC	-	16	5																																																																																																																										21
AATG	-	47	14	6	2		1																																																																																																																						70
AATT	-	63	5	3																																																																																																																									71
ACAA	-	10				1																																																																																																																							11
ACAG	-	2	2	4																																																																																																																									8
ACAT	-	53	18	5	6	5	1	1			1																																																																																																																		90
ACCA	-	1																																																																																																																											1
ACCT	-	1																																																																																																																											1
ACGA	-			1																																																																																																																									1
ACGG	-	1	4		1	1																																																																																																																							7
ACTA	-	2																																																																																																																											2
ACTT	-	1																																																																																																																											1
AGAA	-	19	6	5						1																																																																																																																			31
AGAC	-	6	2		1	2																																																																																																																							11
AGAT	-	7	1	1																																																																																																																									9
AGCA	-	1																																																																																																																											1
AGCC	-		1																																																																																																																										1
AGGA	-	3		2																																																																																																																									5
AGTA	-	1																																																																																																																											1
AGTC	-	1		1																																																																																																																									2
AGTG	-													1																																																																																																															1
ATAA	-	24	3																																																																																																																										27
ATAC	-	10	6	5	1						1										1																																																																																																								24
ATAG	-	7	5	1	1									1						1																																																																																																									16
ATCA	-	10	1		1																																																																																																																								12
ATCC	-	11	6								1																																																																																																																		18
ATCG	-	1	1	1																																																																																																																									3
ATCT	-	6	5	2	1			1																																																																																																																					15
ATGA	-	19	5	5								1																																																																																																																	30
ATGC	-	3																																																																																																																											3
ATGG	-	29	11	5	2	1																																																																																																																							48
ATGT	-	17	12	8	1		1	1	1			1																	1																																																																																																43
ATTA	-	52	6	1																																																																																																																									59
ATTC	-	28	8	5				1																																																																																																																					42
ATTG	-	18	1	3																																																																																																																									22
ATTT	-	41	11																																																																																																																										52
CAAA	-	8	2				1																																																																																																																						11
CAAC	-	2			1																																																																																																																								3
CAAT	-	9	4	1																																																																																																																									14
CAGA	-	2		1																																																																																																																									3
CATA	-	13	4	1	2				1		1					1																																																																																																													23
CATC	-	14	6	3	1	2	1		2																			1																																																																																																	30
CATG	-	2																																																																																																																											2
CATT	-	30	11	8	1	1	1		1		1			1																																																																																																															55
CCAA	-		1																																																																																																																										1
CCAC	-	2																																																																																																																											2
CCAG	-		2																																																																																																																										2
CCAT	-	14	2	2	1	1	1	1	1	1																																																																																																																			24
CCTC	-			1																																																																																																																									1
CCTT	-	2	1	1	1							1																																																																																																																	6
CGCA	-		1																																																																																																																										1
CGTA	-	1																																																																																																																											1
CGTC	-		1																																																																																																																										1
CGTT	-			1																																																																																																																									1
CTAA	-	1																																																																																																																											1
CTAC	-	2				1																																																																																																																							3
CTAG	-	1																																																																																																																											1
CTAT	-	2	2	1	1																																																																																																																								6
CTCC	-	3																																																																																																																											3
CTGT	-	6																																																																																																																											6
CTTC	-	6	3				1				1											1																																																																																																							12
CTTT	-	9	3	1					1	1																																																																																																																			15
GAAA	-	13	1	2	1																																																																																																																								17
GAAG	-	6	1	1		1																																																																																																																							9
GAAT	-	26	6	3	1				1	2		1																																																																																																																	40
GACA	-	2	1																																																																																																																										3
GACG	-	1																																																																																																																											1
GAGG	-	3	1																																																																																																																										4
GAGT	-	1																																																																																																																											1
GATA	-	8	6	5	1	2								1	1																																																																																																														24
GATC	-	4																																																																																																																											4
GATG	-	16	12	4	2	4	3	1	2																																																																																																																				44
GATT	-	8	1																																																																																																																										9
GCAA	-	1																																																																																																																											1
GCTA	-	1																																																																																																																											1
GGAA	-	6	1	2																																																																																																																									9
GGAC	-	2																																																																																																																											2
GGAG	-	2																																																																																																																											2
GGAT	-	14	3	5	1		1	1	1																																																																																																																				26
GGGA	-		1																																																																																																																										1
GGTG	-	3																																																																																																																											3
GGTT	-	1																																																																																																																											1
GTAC	-	1																																																																																																																											1
GTAG	-		2																																																																																																																										2
GTAT	-	9	2	1		1		1	1	1							1		1	1					1																																																																																																				20
GTCA	-					1		1		1	1																																																																																																																		4
GTCT	-		3																																																																																																																										3
GTGG	-	3	1																																																																																																																										4
GTTA	-	2																																																																																																																											2
GTTG	-	1	1																																																																																																																										2
GTTT	-	10	1		1	2																																																																																																																							14
TAAA	-	13																																																																																																																											13
TAAC	-	2																																																																																																																											2
TAAG	-		2																																																																																																																										2
TAAT	-	63	7	1																																																																																																																									71
TACA	-	8	5	1	1		1									1																																																																																																													17
TACC	-	2																																																																																																																											2
TACG	-	1																																																																																																																											1
TAGA	-	7	2	1	1									1																																																																																																															12
TAGG	-			3																																																																																																																									3
TATC	-	6	3	1	1	1																																																																																																																							12
TATG	-	38	12	6	3	1	1	1		1							1																																																																																																												64
TATT	-	21	2																																																																																																																										23
TCAA	-	10	1																																																																																																																										11
TCAC	-			2																																																																																																																									2
TCAG	-	2																																																																																																																											2
TCAT	-	24	7	4		1																																																																																																																							36
TCCA	-	7	2	2		1		1																																																																																																																					13
TCCC	-	4		1																																																																																																																									5
TCCG	-	1																																																																																																																											1
TCCT	-	7	1	1																																																																																																																									9
TCTA	-	5	5						1																																																																																																																				11
TCTG	-	4	2	1																																																																																																																									7
TCTT	-	13	6		1			1				1																																																																																																																	22
TGAA	-	15	5	6	2																																																																																																																								28
TGAC	-	1	1	2																																																																																																																									4
TGAG	-				1																																																																																																																								1
TGAT	-	11	9	1																																																																																																																									21
TGCA	-	2																																																																																																																											2
TGCT	-	3																																																																																																																											3
TGGA	-	36	16	5	2	1	1	1																																																																																																																					62
TGGG	-	5	3																																																																																																																										8
TGGT	-	1	1					1																																																																																																																					3
TGTA	-	41	10	4	2	1	1	1					1	1				1		1																																																																																																									64
TGTC	-	7	6	1		1																																																																																																																							15
TGTT	-	11	3																																																																																																																										14
TTAA	-	57	6																																																																																																																										63
TTAC	-	2	2																																																																																																																										4
TTAG	-	3	1																																																																																																																										4
TTAT	-	25	1	1																																																																																																																									27
TTCA	-	19	8	10																																																																																																																									37
TTCC	-	8	3																																																																																																																										11
TTCG	-		1																																																																																																																										1
TTCT	-	7	1								1	1																																																																																																																	10
TTGA	-	8	7	1																																																																																																																									16
TTGC	-	1																																																																																																																											1
TTGG	-	2	1		1	1																																																																																																																							5
TTGT	-	10	1																																																																																																																										11
TTTA	-	35	2	1																																																																																																																									38
TTTC	-	36	5	3																																																																																																																									44
TTTG	-	17	5																																																																																																																										22
AAAAC	27	6	3																																																																																																																										36
AAAAG	23	1																																																																																																																											24
AAAAT	56	6																																																																																																																											62
AAACA	15																																																																																																																												15
AAACC	2																																																																																																																												2
AAACG	1																																																																																																																												1
AAACT	1																																																																																																																												1
AAAGA	11																																																																																																																												11
AAAGG	3		1																																																																																																																										4
AAAGT	2																																																																																																																												2
AAATA	27	1																																																																																																																											28
AAATC	4	1																																																																																																																											5
AAATG	42	6	1																																																																																																																										49
AAATT	65	5	1																																																																																																																										71
AACAA	10																																																																																																																												10
AACAC	2																																																																																																																												2
AACAT	1																																																																																																																												1
AACGG	2	1	2																																																																																																																										5
AACTA	2																																																																																																																												2
AAGAA	13																																																																																																																												13
AAGAG	1																																																																																																																												1
AAGAT	1																																																																																																																												1
AAGGA	2																																																																																																																												2
AAGGT	1																																																																																																																												1
AAGTA	4																																																																																																																												4
AAGTG	3																																																																																																																												3
AATAA	19	2																																																																																																																											21
AATAC	2																																																																																																																												2
AATAG	1		1																																																																																																																										2
AATAT	6			1																																																																																																																									7
AATCA	3																																																																																																																												3
AATCC			1																																																																																																																										1
AATCG	2																																																																																																																												2
AATCT	1																																																																																																																												1
AATGA	29	7	2							1																																																																																																																			39
AATGC	2	1																																																																																																																											3
AATGG	700	292	102	42	25	23	27	10	4	10		1																																																																																																																	1236
AATGT	8	5																																																																																																																											13
AATTA	40	1																																																																																																																											41
AATTC	9	2	1																																																																																																																										12
AATTG	6																																																																																																																												6
AATTT	38	4																																																																																																																											42
ACAAA	6																																																																																																																												6
ACAAC	1																																																																																																																												1
ACAAG	1																																																																																																																												1
ACAAT	2																																																																																																																												2
ACACA	2																																																																																																																												2
ACACG	1																																																																																																																												1
ACATA	1																																																																																																																												1
ACATC	1																																																																																																																												1
ACATG	2																																																																																																																												2
ACATT	6																																																																																																																												6
ACCAT	1																																																																																																																												1
ACCTT	1																																																																																																																												1
ACGGA	1	1																																																																																																																											2
ACGTC	1																																																																																																																												1
ACTAA	1																																																																																																																												1
ACTAT	1																																																																																																																												1
ACTCA	1																																																																																																																												1
ACTCC	57	10	2																																																																																																																										69
ACTGT	1																																																																																																																												1
ACTTC	1	1																																																																																																																											2
AGAAA	6	2																																																																																																																											8
AGAAG	2																																																																																																																												2
AGAAT	3																																																																																																																												3
AGAGA	1	1																																																																																																																											2
AGAGG	1																																																																																																																												1
AGAGT	1																																																																																																																												1
AGATA	1																																																																																																																												1
AGATC	2																																																																																																																												2
AGCCT	1																																																																																																																												1
AGCTA		1																																																																																																																											1
AGCTC	1	1																																																																																																																											2
AGCTG	1		1																																																																																																																										2
AGGAA	1																																																																																																																												1
AGGAC	1																																																																																																																												1
AGGAG	1																																																																																																																												1
AGGTC	1																																																																																																																												1
AGTAA		1																																																																																																																											1
AGTAG	1																																																																																																																												1
AGTCC	1																																																																																																																												1
AGTGG	168	23			1																																																																																																																								192
AGTGT	5	1																																																																																																																											6
AGTTA	2																																																																																																																												2
AGTTG	2																																																																																																																												2
AGTTT	1																																																																																																																												1
ATAAA	20	2																																																																																																																											22
ATAAG	2	1																																																																																																																											3
ATAAT	8		1		1								1																																																																																																																11
ATACA																							1																																																																																																						1
ATACG	1		1																																																																																																																										2
ATAGA	2																																																																																																																												2
ATAGT	2																																																																																																																												2
ATATA	17	4																																																																																																																											21
ATATC	9	2																																																																																																																											11
ATATG	8	1	1																																																																																																																										10
ATATT	5																																																																																																																												5
ATCAA	1	1																																																																																																																											2
ATCAC	2																																																																																																																												2
ATCAG	2																																																																																																																												2
ATCAT	4	1																																																																																																																											5
ATCCA	1					1																																																																																																																							2
ATCCC	1																																																																																																																												1
ATCGA	1																																																																																																																												1
ATCTA	1			1						1																																																																																																																			3
ATCTC	1		1																																																																																																																										2
ATCTG	6																																																																																																																												6
ATGAA	14	2		1																																																																																																																									17
ATGAC	1																																																																																																																												1
ATGAT	9	1	2																																																																																																																										12
ATGCA		1																																																																																																																											1
ATGCT	1																																																																																																																												1
ATGGA	232	95	41	18	11	10	10	6	3																																																																																																																				426
ATGGG	2																																																																																																																												2
ATGGT	1																																																																																																																												1
ATGTG	1																																																																																																																												1
ATTAA	29	1																																																																																																																											30
ATTAC	5	1					1																																																																																																																						7
ATTAG	1	2																																																																																																																											3
ATTAT	7	1																																																																																																																											8
ATTCA	19	2																																																																																																																											21
ATTCC	699	366	191	97	42	35	26	20	16	6	2																																																																																																																		1500
ATTCG	1																																																																																																																												1
ATTCT	6		1																																																																																																																										7
ATTGA	4	1																																																																																																																											5
ATTGC	1																																																																																																																												1
ATTGG	1																																																																																																																												1
ATTGT	2																																																																																																																												2
ATTTA	24	4																																																																																																																											28
ATTTC	38	7																																																																																																																											45
ATTTG	3	2																																																																																																																											5
ATTTT	58	3	1																																																																																																																										62
CAAAA	4																																																																																																																												4
CAAAG	1																																																																																																																												1
CAAAT	4																																																																																																																												4
CAACT	4																																																																																																																												4
CAATC	2																																																																																																																												2
CAATG	2																																																																																																																												2
CAATT	6	3																																																																																																																											9
CACAA	1				1																																																																																																																								2
CACAT	1																																																																																																																												1
CACCC		1																																																																																																																											1
CACTC	79	16																																																																																																																											95
CACTG	1																																																																																																																												1
CAGAT	2																																																																																																																												2
CAGCA	1																																																																																																																												1
CAGTC	1																																																																																																																												1
CAGTT	1																																																																																																																												1
CATAA	1																																																																																																																												1
CATAT	3																																																																																																																												3
CATCA	4																																																																																																																												4
CATCG	1																																																																																																																												1
CATGC	1																																																																																																																												1
CATTA	7		1																																																																																																																										8
CATTC	632	293	97	56	27	26	19	10	4	1	1																																																																																																																		1166
CATTG	8	1																																																																																																																											9
CATTT	35	3	1		1																																																																																																																								40
CCAAT	1		1																																																																																																																										2
CCACT	24	5																																																																																																																											29
CCATA	1																																																																																																																												1
CCATC	1	1																																																																																																																											2
CCATT	206	59	41	6	6	5	6		1	1		1																																																																																																																	332
CCCAT	1																																																																																																																												1
CCCCT	1																																																																																																																												1
CCCTC	1																																																																																																																												1
CCCTT	2																																																																																																																												2
CCTCT			1																																																																																																																										1
CCTTT	3																																																																																																																												3
CGAAT	1																																																																																																																												1
CGATC	2																																																																																																																												2
CGGAA	3				1																																																																																																																								4
CGGGG	1																																																																																																																												1
CGTAA		1																																																																																																																											1
CGTCA		1																																																																																																																											1
CGTGA	1																																																																																																																												1
CGTTC	3																																																																																																																												3
CGTTT		1																																																																																																																											1
CTAAA	1																																																																																																																												1
CTAAC	1																																																																																																																												1
CTAAG	1																																																																																																																												1
CTAGC	2																																																																																																																												2
CTATA	1																																																																																																																												1
CTATG	1																																																																																																																												1
CTATT	1	1																																																																																																																											2
CTCAA	6	1																																																																																																																											7
CTCAG	2																																																																																																																												2
CTCCA	57	11																																																																																																																											68
CTCCT	1																																																																																																																												1
CTCTC	1																																																																																																																												1
CTCTT	4																																																																																																																												4
CTGAC		1																																																																																																																											1
CTGAT	2																																																																																																																												2
CTTAA	1																																																																																																																												1
CTTAT	2																																																																																																																												2
CTTCA	3																																																																																																																												3
CTTCC	1																																																																																																																												1
CTTCT	4																																																																																																																												4
CTTGG	1																																																																																																																												1
CTTTA	1																																																																																																																												1
CTTTC	8	2	1																																																																																																																										11
CTTTT	12	2																																																																																																																											14
GAAAA	18	1																																																																																																																											19
GAAAC		1																																																																																																																											1
GAAAG	2																																																																																																																												2
GAAAT	35		3																																																																																																																										38
GAACG	4	2	1																																																																																																																										7
GAACT	1																																																																																																																												1
GAAGA	1	1																																																																																																																											2
GAAGG	1																																																																																																																												1
GAAGT				1																																																																																																																									1
GAATA	5																																																																																																																												5
GAATG	676	244	97	30	11	12	10	4	5																																																																																																																				1089
GAATT	9	2																																																																																																																											11
GACAG	1																																																																																																																												1
GACTG	1																																																																																																																												1
GAGAT	1																																																																																																																												1
GAGCC	1																																																																																																																												1
GAGTA	1																																																																																																																												1
GAGTG	113	24	1																																																																																																																										138
GAGTT	1																																																																																																																												1
GATAA	2																																																																																																																												2
GATAC	1																																																																																																																												1
GATAG	1																																																																																																																												1
GATAT	3																																																																																																																												3
GATCA	1																																																																																																																												1
GATCT	3																																																																																																																												3
GATGG		1																																																																																																																											1
GATTA	3																																																																																																																												3
GATTC	4	1																																																																																																																											5
GATTT	3																																																																																																																												3
GCAAA	2		1																																																																																																																										3
GCAAT	1																																																																																																																												1
GCATT	2																																																																																																																												2
GCGGT	1																																																																																																																												1
GCTAA	1																																																																																																																												1
GCTAT	1																																																																																																																												1
GCTCA	1																																																																																																																												1
GGAAA	2																																																																																																																												2
GGAAC	5	1																																																																																																																											6
GGAAG	3																																																																																																																												3
GGAAT	593	249	122	62	22	16	15	11	8	2	2	1																																																																																																																	1103
GGACA	1																																																																																																																												1
GGACG		1																																																																																																																											1
GGACT	2																																																																																																																												2
GGAGA		1																																																																																																																											1
GGAGG	1																																																																																																																												1
GGAGT	120	14	2		1																																																																																																																								137
GGATC	1																																																																																																																												1
GGATG	2	1																																																																																																																											3
GGATT	2																																																																																																																												2
GGGAA	1																																																																																																																												1
GGGAC	1																																																																																																																												1
GGGAG		1																																																																																																																											1
GGGGA	1																																																																																																																												1
GGGGC		1																																																																																																																											1
GGGGT				1																																																																																																																									1
GGTAA	1																																																																																																																												1
GGTAG		1																																																																																																																											1
GGTAT		1																																																																																																																											1
GGTGT	1																																																																																																																												1
GGTTT			1																																																																																																																										1
GTAAT	2																																																																																																																												2
GTCAT	1																																																																																																																												1
GTCCA	1																																																																																																																												1
GTCCC	2																																																																																																																												2
GTGAA	2	1																																																																																																																											3
GTGAT	1																																																																																																																												1
GTGGA	87	15	2																																																																																																																										104
GTGTG	2	1																																																																																																																											3
GTTAC	1	2																																																																																																																											3
GTTCA	1																																																																																																																												1
GTTCC	4	2																																																																																																																											6
GTTCG	1																																																																																																																												1
GTTGA	2	1																																																																																																																											3
GTTTT	10	1																																																																																																																											11
TAAAA	26	1																																																																																																																											27
TAAAC	1																																																																																																																												1
TAAAT	17	1																																																																																																																											18
TAACG	1																																																																																																																												1
TAACT	2																																																																																																																												2
TAAGA	1																																																																																																																												1
TAAGC	1																																																																																																																												1
TAAGG	1																																																																																																																												1
TAATA	6																																																																																																																												6
TAATC	2																																																																																																																												2
TAATG	2																																																																																																																												2
TAATT	33																																																																																																																												33
TACAA	1																																																																																																																												1
TACAG	1																																																																																																																												1
TACAT	1					2																																																																																																																							3
TACCA	1																																																																																																																												1
TACGT	1																																																																																																																												1
TACTA	2	1																																																																																																																											3
TACTG	2																																																																																																																												2
TACTT	2																																																																																																																												2
TAGAA	2	1																																																																																																																											3
TAGAG	2																																																																																																																												2
TAGAT	2	1																																																																																																																											3
TAGGG	1																																																																																																																												1
TAGTT	3																																																																																																																												3
TATAA	1	1			1																																																																																																																								3
TATAC	1																																																																																																																												1
TATAG	4																																																																																																																												4
TATAT	16																																																																																																																												16
TATCA	8	1	1	1		1																																																																																																																							12
TATCC	2																																																																																																																												2
TATGA	5																																																																																																																												5
TATGG	1																																																																																																																												1
TATTA	7	2																																																																																																																											9
TATTC	5																																																																																																																												5
TATTG	1																																																																																																																												1
TATTT	13																																																																																																																												13
TCAAA	6																																																																																																																												6
TCAAC		1																																																																																																																											1
TCAAT	8																																																																																																																												8
TCACA	2	1																																																																																																																											3
TCACC	1																																																																																																																												1
TCACT	2																																																																																																																												2
TCAGC	3	1																																																																																																																											4
TCAGT	2																																																																																																																												2
TCATA	3	1	1																																																																																																																										5
TCATC	1																																																																																																																												1
TCATT	11	3																																																																																																																											14
TCCAA	2																																																																																																																												2
TCCAC	265	34	1	2																																																																																																																									302
TCCAG	5																																																																																																																												5
TCCAT	671	266	79	16	6	5	5	2																																																																																																																					1050
TCCCA	1																																																																																																																												1
TCCCC	2																																																																																																																												2
TCCCG	1	1																																																																																																																											2
TCCGT		2																																																																																																																											2
TCCTC		1																																																																																																																											1
TCCTT	2																																																																																																																												2
TCGAA	2																																																																																																																												2
TCGTA	2	1																																																																																																																											3
TCTAA	1			1																																																																																																																									2
TCTAT	1	1																																																																																																																											2
TCTCT	2	3																																																																																																																											5
TCTGA	6																																																																																																																												6
TCTGC	1																																																																																																																												1
TCTTA		1																																																																																																																											1
TCTTC	3																																																																																																																												3
TCTTT	10	1																																																																																																																											11
TGAAA	25	3																																																																																																																											28
TGAAG	5	1																																																																																																																											6
TGAAT	19	2	2																																																																																																																										23
TGACA	1																																																																																																																												1
TGACC			1																																																																																																																										1
TGAGT	1	1																																																																																																																											2
TGATA	9	1	1	2																																																																																																																									13
TGATC	3	1		1																																																																																																																									5
TGATG	2																																																																																																																												2
TGATT	6																																																																																																																												6
TGCAA	1																																																																																																																												1
TGCAT	3																																																																																																																												3
TGCTC	1																																																																																																																												1
TGGAA	978	413	150	45	26	34	27	12	2		2	1	1																																																																																																																1691
TGGAC	6	1																																																																																																																											7
TGGAG	377	61	2																																																																																																																										440
TGGAT	3	1																																																																																																																											4
TGGGA	1																																																																																																																												1
TGGTA	1																																																																																																																												1
TGGTT	1																																																																																																																												1
TGTAA	5																																																																																																																												5
TGTAG			1																																																																																																																										1
TGTAT	1																																																																																																																												1
TGTCA	2																																																																																																																												2
TGTGT	5																																																																																																																												5
TGTTA	1																																																																																																																												1
TGTTC	1																																																																																																																												1
TGTTG	2																																																																																																																												2
TGTTT	9																																																																																																																												9
TTAAA	34																																																																																																																												34
TTAAC	1																																																																																																																												1
TTAAT	27	3																																																																																																																											30
TTACA	1		1																																																																																																																										2
TTACT	3		1																																																																																																																										4
TTATA	5																																																																																																																												5
TTATC	2																																																																																																																												2
TTATG	1																																																																																																																												1
TTATT	23	2	1																																																																																																																										26
TTCAA	10																																																																																																																												10
TTCAC	2																																																																																																																												2
TTCAG	2																																																																																																																												2
TTCAT	30	3	1																																																																																																																										34
TTCCA	594	287	121	23	14	18	16	7	7	2																																																																																																																			1089
TTCCC	1	1																																																																																																																											2
TTCCG	6	2	1		1																																																																																																																								10
TTCCT	7	3																																																																																																																											10
TTCTA	4	1	1																																																																																																																										6
TTCTC	2																																																																																																																												2
TTCTG	1																																																																																																																												1
TTCTT	19																																																																																																																												19
TTGAA	9	1	1																																																																																																																										11
TTGAG	4					1																																																																																																																							5
TTGAT	2																																																																																																																												2
TTGCT	1																																																																																																																												1
TTGGT	1	3	1		1	2					1																																																																																																																		9
TTGTA	2	1																																																																																																																											3
TTGTG	2																																																																																																																												2
TTGTT	6																																																																																																																												6
TTTAA	39																																																																																																																												39
TTTAC	3																																																																																																																												3
TTTAT	23	1																																																																																																																											24
TTTCA	33	6	3	2																																																																																																																									44
TTTCC	8																																																																																																																												8
TTTCT	11	2																																																																																																																											13
TTTGA	4																																																																																																																												4
TTTGG	1																																																																																																																												1
TTTGT	10																																																																																																																												10
TTTTA	23	2																																																																																																																											25
TTTTC	50	3																																																																																																																											53
TTTTG	17	2																																																																																																																											19
AAAAAC	8																																																																																																																												8
AAAAAG	5																																																																																																																												5
AAAAAT	10																																																																																																																												10
AAAACA	2																																																																																																																												2
AAAAGA	3																																																																																																																												3
AAAAGG	1																																																																																																																												1
AAAATA	3																																																																																																																												3
AAAATG	4																																																																																																																												4
AAAATT	9																																																																																																																												9
AAACAA	3																																																																																																																												3
AAACGT	2																																																																																																																												2
AAAGAA	4																																																																																																																												4
AAAGAG	5																																																																																																																												5
AAAGAT	1																																																																																																																												1
AAAGGA	1																																																																																																																												1
AAATAA	2																																																																																																																												2
AAATAC	2																																																																																																																												2
AAATAT	2																																																																																																																												2
AAATCC	1																																																																																																																												1
AAATGA	1																																																																																																																												1
AAATGG	1																																																																																																																												1
AAATTA	5																																																																																																																												5
AAATTC	1																																																																																																																												1
AAATTT	16	1																																																																																																																											17
AACAAA	2																																																																																																																												2
AACAAT	5	2																																																																																																																											7
AACAGC	2																																																																																																																												2
AACAGT	1																																																																																																																												1
AACGAC	1																																																																																																																												1
AACGTG	1																																																																																																																												1
AACTCC	2																																																																																																																												2
AACTGA	1																																																																																																																												1
AAGAGA	5	1																																																																																																																											6
AAGATC		1																																																																																																																											1
AAGCCT		2	1																																																																																																																										3
AAGGAA	2																																																																																																																												2
AAGTGA	1																																																																																																																												1
AATAAA	3																																																																																																																												3
AATAAC	3	1																																																																																																																											4
AATACA	1																																																																																																																												1
AATAGT	2	1																																																																																																																											3
AATATA	1																																																																																																																												1
AATGAC	1																																																																																																																												1
AATGAT	6	2	1	1																																																																																																																									10
AATGTG	1			1																																																																																																																									2
AATTAT	2																																																																																																																												2
AATTCT	1																																																																																																																												1
AATTGA	3																																																																																																																												3
AATTTA	2																																																																																																																												2
AATTTC	5																																																																																																																												5
AATTTG	1																																																																																																																												1
AATTTT	16																																																																																																																												16
ACAAAA	1																																																																																																																												1
ACAAAC								1																																																																																																																					1
ACAACG	1																																																																																																																												1
ACAACT	1	1																																																																																																																											2
ACACAG	3	1																																																																																																																											4
ACACAT	35	9	3																																																																																																																										47
ACAGAC	2																																																																																																																												2
ACAGCA	1																																																																																																																												1
ACATAC	29	2	1																																																																																																																										32
ACATAT	1																																																																																																																												1
ACCAAC	1																																																																																																																												1
ACCATC	2	1																																																																																																																											3
ACCATT	1																																																																																																																												1
ACCCGT	1																																																																																																																												1
ACGATC	1																																																																																																																												1
ACTACA	3																																																																																																																												3
ACTACC		1																																																																																																																											1
ACTATT	1																																																																																																																												1
ACTGCT	1																																																																																																																												1
AGAAAA	3																																																																																																																												3
AGAAAG	5																																																																																																																												5
AGAACT	1																																																																																																																												1
AGACAT	1																																																																																																																												1
AGAGAA	9	1																																																																																																																											10
AGAGGG	2	1																																																																																																																											3
AGATGA	1																																																																																																																												1
AGATTC	1																																																																																																																												1
AGCAAC	1																																																																																																																												1
AGCAAT	1																																																																																																																												1
AGCACC		1																																																																																																																											1
AGCAGT	2																																																																																																																												2
AGCATT	1																																																																																																																												1
AGCCTA	2																																																																																																																												2
AGCTGC	1																																																																																																																												1
AGGAGA	1																																																																																																																												1
AGGTGG	1																																																																																																																												1
AGTAAA	1																																																																																																																												1
AGTAAT	1	1																																																																																																																											2
AGTACC	1																																																																																																																												1
AGTAGA	1																																																																																																																												1
AGTATT	2																																																																																																																												2
AGTGAG	1																																																																																																																												1
AGTGAT			1																																																																																																																										1
AGTGCA		1																																																																																																																											1
AGTTCA	1																																																																																																																												1
AGTTGC	1																																																																																																																												1
AGTTGT		1																																																																																																																											1
ATAAAA	1																																																																																																																												1
ATAATC	1																																																																																																																												1
ATAATG	11	3																																																																																																																											14
ATAATT	3																																																																																																																												3
ATACAC	16	1	2	1																																																																																																																									20
ATACAT	3					1																																																																																																																							4
ATACTG	1																																																																																																																												1
ATAGAT		1																																																																																																																											1
ATAGTA	1																																																																																																																												1
ATATAA	1																																																																																																																												1
ATATAC	1	1	1																																																																																																																										3
ATATAG	2																																																																																																																												2
ATATGT	1																																																																																																																												1
ATATTA	2																																																																																																																												2
ATATTT	1																																																																																																																												1
ATCACA		1																																																																																																																											1
ATCACC	2	1																																																																																																																											3
ATCACT	2																																																																																																																												2
ATCATT	13	1																																																																																																																											14
ATCTTC	1																																																																																																																												1
ATGAAG	1																																																																																																																												1
ATGACG	1																																																																																																																												1
ATGATA	11	1																																																																																																																											12
ATGATC	1																																																																																																																												1
ATGATT	1																																																																																																																												1
ATGGTG	2																																																																																																																												2
ATGTGT	3	1	1																																																																																																																										5
ATGTTG	1		1																																																																																																																										2
ATTAAA	4																																																																																																																												4
ATTAAT	1																																																																																																																												1
ATTAGA	1																																																																																																																												1
ATTATA	7																																																																																																																												7
ATTATC	10	1																																																																																																																											11
ATTATG	2																																																																																																																												2
ATTCAA	2																																																																																																																												2
ATTCCA	1																																																																																																																												1
ATTGAA	3																																																																																																																												3
ATTGCT	1																																																																																																																												1
ATTGTC	1																																																																																																																												1
ATTGTT	1																																																																																																																												1
ATTTAA	3																																																																																																																												3
ATTTAT					1																																																																																																																								1
ATTTCA	4																																																																																																																												4
ATTTCC	2																																																																																																																												2
ATTTCT	1																																																																																																																												1
ATTTGA	1																																																																																																																												1
ATTTTA	3																																																																																																																												3
ATTTTC	2																																																																																																																												2
ATTTTT	15	1																																																																																																																											16
CAAAAA	2																																																																																																																												2
CAAACC	1																																																																																																																												1
CAACAG	5																																																																																																																												5
CAACTA		1																																																																																																																											1
CAACTC	1																																																																																																																												1
CAATAA	4																																																																																																																												4
CACACG	2																																																																																																																												2
CACATA	3	2																																																																																																																											5
CACCAT	3	2																																																																																																																											5
CACCCT	1																																																																																																																												1
CACCTC	1																																																																																																																												1
CACGCA	1																																																																																																																												1
CAGACA		1																																																																																																																											1
CAGCAA	1																																																																																																																												1
CAGTAG	1																																																																																																																												1
CATACA	8	1																																																																																																																											9
CATCAA	1																																																																																																																												1
CATCAC	8																																																																																																																												8
CATCAG	1	1																																																																																																																											2
CATTAT	7		1																																																																																																																										8
CATTGC	1																																																																																																																												1
CATTTC	2																																																																																																																												2
CATTTT	2			1																																																																																																																									3
CCACCT		1																																																																																																																											1
CCATAA			1																																																																																																																										1
CCATCA	3																																																																																																																												3
CCCACC		1																																																																																																																											1
CCCTCT	1																																																																																																																												1
CCGCTT	1																																																																																																																												1
CCTAAG	2				2																																																																																																																								4
CCTCAT	1																																																																																																																												1
CCTCTA		1																																																																																																																											1
CCTCTC		1																																																																																																																											1
CCTCTT	1																																																																																																																												1
CCTGTC	1																																																																																																																												1
CCTTCT	1																																																																																																																												1
CCTTTA	1																																																																																																																												1
CCTTTC	1																																																																																																																												1
CCTTTT	1																																																																																																																												1
CGATGA		1																																																																																																																											1
CGATTG	1																																																																																																																												1
CGGCAG	1																																																																																																																												1
CGGTTG		1																																																																																																																											1
CGTCTT	1																																																																																																																												1
CTAAGC	2			2	3	2																																																																																																																							9
CTACTG	3																																																																																																																												3
CTAGCA	1																																																																																																																												1
CTATTA	3		1																																																																																																																										4
CTCAAA		1																																																																																																																											1
CTCCCC	1																																																																																																																												1
CTCCCT	1																																																																																																																												1
CTCTCA	1																																																																																																																												1
CTCTGT	3																																																																																																																												3
CTCTTC	1																																																																																																																												1
CTCTTT	2	1	1																																																																																																																										4
CTGAAA	1																																																																																																																												1
CTGATG	1																																																																																																																												1
CTGGGG	1																																																																																																																												1
CTGTCT	1																																																																																																																												1
CTGTGT	1																																																																																																																												1
CTGTTG	1	1																																																																																																																											2
CTTAGG	4																																																																																																																												4
CTTATC		1																																																																																																																											1
CTTCAA	1																																																																																																																												1
CTTCCT	1	1																																																																																																																											2
CTTCTA	1																																																																																																																												1
CTTGTT		1																																																																																																																											1
CTTTCA	1																																																																																																																												1
CTTTCT	1																																																																																																																												1
CTTTTG	1																																																																																																																												1
CTTTTT	2																																																																																																																												2
GAAAAA	3																																																																																																																												3
GAAAAT	3																																																																																																																												3
GAAAGA	3	1																																																																																																																											4
GAAATT	1																																																																																																																												1
GAAGAC	1																																																																																																																												1
GAAGAG	2																																																																																																																												2
GAAGCT	1																																																																																																																												1
GAAGTT	1																																																																																																																												1
GAATCA	1																																																																																																																												1
GAATGT	2																																																																																																																												2
GAATTT	1																																																																																																																												1
GAGAAA	1	2																																																																																																																											3
GAGGAA	2																																																																																																																												2
GAGTAG	1																																																																																																																												1
GATAAC	1																																																																																																																												1
GATAAT	7																																																																																																																												7
GATACA	1																																																																																																																												1
GATGAC	1																																																																																																																												1
GATTCT	1																																																																																																																												1
GATTTG	1																																																																																																																												1
GCATCA	1																																																																																																																												1
GCCTAA	1		1																																																																																																																										2
GCGGGG		1																																																																																																																											1
GCTGCA	1																																																																																																																												1
GCTGGT	2																																																																																																																												2
GCTGTG	1																																																																																																																												1
GCTGTT		1																																																																																																																											1
GCTTAG	2																																																																																																																												2
GCTTTG	1																																																																																																																												1
GGAAAA	1																																																																																																																												1
GGAAAT	1																																																																																																																												1
GGAAGA	1																																																																																																																												1
GGACAA	1																																																																																																																												1
GGAGTA	1																																																																																																																												1
GGATCG	1																																																																																																																												1
GGCGGT	1																																																																																																																												1
GGCTGT	1																																																																																																																												1
GGCTTA	3	1			1		1	1																																																																																																																					7
GGGACA	1																																																																																																																												1
GGGGGT		1																																																																																																																											1
GGTAGT	1																																																																																																																												1
GGTGAT	1			1																																																																																																																									2
GGTGCA	1																																																																																																																												1
GTAAAA	2																																																																																																																												2
GTAATA	1																																																																																																																												1
GTAATG	1																																																																																																																												1
GTAATT	1																																																																																																																												1
GTACAG	1																																																																																																																												1
GTAGAT	1																																																																																																																												1
GTAGCA	3																																																																																																																												3
GTAGTT		1																																																																																																																											1
GTATAT	1																																																																																																																												1
GTATCA	1																																																																																																																												1
GTATGT		2	1																																																																																																																										3
GTCATC	1																																																																																																																												1
GTGAGT	1																																																																																																																												1
GTGATA	1																																																																																																																												1
GTGATG	5	2																																																																																																																											7
GTGTAT	5	1	1																																																																																																																										7
GTGTGC		1																																																																																																																											1
GTGTGG	1	2																																																																																																																											3
GTTCAC	1																																																																																																																												1
GTTGAA	1																																																																																																																												1
GTTGTA	1																																																																																																																												1
GTTGTC	1		1																																																																																																																										2
GTTGTG	1																																																																																																																												1
GTTTAA	1																																																																																																																												1
GTTTAT	1																																																																																																																												1
GTTTCA	1																																																																																																																												1
GTTTGA	1																																																																																																																												1
GTTTTT	2																																																																																																																												2
TAAAAA	2																																																																																																																												2
TAAAAT	2																																																																																																																												2
TAAAGA	1																																																																																																																												1
TAAATA	2																																																																																																																												2
TAAATC	1																																																																																																																												1
TAAATG	2																																																																																																																												2
TAAATT	3																																																																																																																												3
TAACAA	2	1																																																																																																																											3
TAACAT	1																																																																																																																												1
TAAGCC	1	1																																																																																																																											2
TAAGTT	1																																																																																																																												1
TAATAG	2																																																																																																																												2
TAATGA	5																																																																																																																												5
TAATGT	1																																																																																																																												1
TAATTC	1																																																																																																																												1
TAATTG	1	1																																																																																																																											2
TAATTT	1																																																																																																																												1
TACACA	3	4																																																																																																																											7
TACATA	1																																																																																																																												1
TACGGA	1																																																																																																																												1
TACTAA	3																																																																																																																												3
TACTAT	5																																																																																																																												5
TACTCA	1																																																																																																																												1
TACTCC	1																																																																																																																												1
TACTGC	2	1																																																																																																																											3
TAGAAA	1																																																																																																																												1
TAGATA	1																																																																																																																												1
TAGATC	1																																																																																																																												1
TAGTAA	1	1																																																																																																																											2
TAGTAT	1																																																																																																																												1
TAGTGA		1																																																																																																																											1
TATAAA	2																																																																																																																												2
TATACA	1																																																																																																																												1
TATATC	1																																																																																																																												1
TATATG	4	1																																																																																																																											5
TATATT	2																																																																																																																												2
TATCAA	1																																																																																																																												1
TATCAT	5	1																																																																																																																											6
TATCTC					1																																																																																																																								1
TATGCT	1																																																																																																																												1
TATGTA	3	1																																																																																																																											4
TATGTG	14	1																																																																																																																											15
TATTAC	3	2																																																																																																																											5
TATTGC	1																																																																																																																												1
TATTTA	2																																																																																																																												2
TATTTT	3																																																																																																																												3
TCAAAA	1																																																																																																																												1
TCAATA	1																																																																																																																												1
TCACCA	3																																																																																																																												3
TCATCT	1																																																																																																																												1
TCATTA	5																																																																																																																												5
TCATTG	1	1																																																																																																																											2
TCATTT	1																																																																																																																												1
TCCACC	1																																																																																																																												1
TCCATT	1																																																																																																																												1
TCCCTC	2																																																																																																																												2
TCCCTG	1																																																																																																																												1
TCCTCG		1																																																																																																																											1
TCCTTC	2	1																																																																																																																											3
TCGTGA	1																																																																																																																												1
TCTCTT	9	2																																																																																																																											11
TCTGAT	1																																																																																																																												1
TCTGTA	1																																																																																																																												1
TCTGTT	1																																																																																																																												1
TCTTAC	1																																																																																																																												1
TCTTCA	1																																																																																																																												1
TCTTCC	1	1																																																																																																																											2
TCTTTA	1																																																																																																																												1
TCTTTC	2	1																																																																																																																											3
TCTTTT	1																																																																																																																												1
TGAAAA	2																																																																																																																												2
TGAAAG		1																																																																																																																											1
TGAAAT	6																																																																																																																												6
TGAAGA	1																																																																																																																												1
TGAATT	1																																																																																																																												1
TGACGG	1																																																																																																																												1
TGATAA	8																																																																																																																												8
TGATAG	2																																																																																																																												2
TGATCA	1																																																																																																																												1
TGATGG	17	1																																																																																																																											18
TGATGT	1																																																																																																																												1
TGATTA	1																																																																																																																												1
TGATTT	1																																																																																																																												1
TGCAAA	1	1																																																																																																																											2
TGCAGC	1																																																																																																																												1
TGCAGT	2																																																																																																																												2
TGCGTT					1																																																																																																																								1
TGCTAC	1																																																																																																																												1
TGCTAG	2																																																																																																																												2
TGCTGT		1																																																																																																																											1
TGGAAA	2																																																																																																																												2
TGGAGG	2																																																																																																																												2
TGGTGA	9																																																																																																																												9
TGTACG	1																																																																																																																												1
TGTAGC	1																																																																																																																												1
TGTATA	4																																																																																																																												4
TGTATG	28	7																																																																																																																											35
TGTCGT		1																																																																																																																											1
TGTCTG	1																																																																																																																												1
TGTGCA	1																																																																																																																												1
TGTGTA	38	10	2																																																																																																																										50
TGTGTC	3																																																																																																																												3
TGTGTT	2																																																																																																																												2
TGTTAA	1																																																																																																																												1
TGTTAT	3		1																																																																																																																										4
TGTTGC	2																																																																																																																												2
TGTTTG	1																																																																																																																												1
TGTTTT	1																																																																																																																												1
TTAAAA	7																																																																																																																												7
TTAAAT	2																																																																																																																												2
TTAAGA	1																																																																																																																												1
TTAATT	1																																																																																																																												1
TTACTA	1																																																																																																																												1
TTACTG	1																																																																																																																												1
TTAGGC	3																																																																																																																												3
TTATAA	2																																																																																																																												2
TTATAT	1																																																																																																																												1
TTATCA	4																																																																																																																												4
TTATCG	1																																																																																																																												1
TTATGC	1																																																																																																																												1
TTATTG	10																																																																																																																												10
TTATTT	3																																																																																																																												3
TTCAAA	1																																																																																																																												1
TTCAAT	1																																																																																																																												1
TTCATT	3	1																																																																																																																											4
TTCCTT	1																																																																																																																												1
TTCGTT	1																																																																																																																												1
TTCTAT	1																																																																																																																												1
TTCTCT	5			1																																																																																																																									6
TTCTGC	2																																																																																																																												2
TTCTTT	1																																																																																																																												1
TTGAAA	3																																																																																																																												3
TTGAAG	1																																																																																																																												1
TTGAGG	1																																																																																																																												1
TTGCTA	1																																																																																																																												1
TTGTAT	1																																																																																																																												1
TTGTCC	1																																																																																																																												1
TTGTCG	3																																																																																																																												3
TTGTTA	5																																																																																																																												5
TTGTTC	1																																																																																																																												1
TTGTTT	1																																																																																																																												1
TTTAAA	7	1																																																																																																																											8
TTTATA	2																																																																																																																												2
TTTATC	1																																																																																																																												1
TTTATT	3																																																																																																																												3
TTTCAA	4	2																																																																																																																											6
TTTCAT	4							1																																																																																																																					5
TTTCTC	3																																																																																																																												3
TTTCTT	2																																																																																																																												2
TTTGAA	1																																																																																																																												1
TTTGCT	1																																																																																																																												1
TTTGGT	2																																																																																																																												2
TTTGTG			1																																																																																																																										1
TTTGTT	3																																																																																																																												3
TTTTAA	8																																																																																																																												8
TTTTAT	1																																																																																																																												1
TTTTCA	2		1	2	1		1												1																																																																																																										8
TTTTCT	1																																																																																																																												1
TTTTGC	1																																																																																																																												1
TTTTGT	4																																																																																																																												4
TTTTTA	6	2																																																																																																																											8
TTTTTC	2																																																																																																																												2
TTTTTG	11	1																																																																																																																											12

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	833	689	510	472	394	331	239	191	168	125	99	61	64	32	17	24	16	6	10	10	12	4	8	5	3	3	3	2	1	4	3	1	2	1				3		2			1	2			1								1	1		1						1													1	2																												1	2	4362
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	9	7	3	4	7	4	5	1	4	3			2		3	1	1			1	1	2	2					1	1				1		1		1	1	1				1												1															1																	1							1	1												1	74
AC/GT	-	-	-	800	502	349	263	180	141	113	91	53	57	31	46	20	33	18	15	22	7	17	8	11	10	9	5	10	8	2	8	5	2	1	2	2	4	2	3	4	2	1	3		2	1				1	2	1						1		4	6	1																																																															2879
AG/CT	-	-	-	668	426	364	245	206	120	73	50	34	25	24	9	11	2	1	6	5	1			1	1																																																																																																				2272
AT/AT	-	-	-	884	541	401	278	188	174	108	61	49	36	23	17	7	3	4	1	2	1	2	3	2	1																																																																																																				2786
CG/CG	-	-	-	1	2																																																																																																																								3
AAC/GTT	-	-	235	121	84	38	34	15	3	10	7	3	4	2	1	2		1	3	1	2					1	1				1	1									1																																																																																				571
AAG/CTT	-	-	88	29	15	2	3		1	1						1																																																																																																													140
AAT/ATT	-	-	1004	521	190	124	58	57	39	40	34	38	29	37	33	32	44	32	29	36	35	30	20	24	29	26	18	7	11	8	12	14	8	6	10	5	3	9	8	15																																																																																					2675
ACC/GGT	-	-	146	53	21	10	7	4	6	3	1	1			1																																																																																																														253
ACG/CGT	-	-	10	3	1				1																																																																																																																				15
ACT/AGT	-	-	197	112	69	37	25	14	12	9	1	2	5	5	4	1	4	3		1	1	3		1	1							1								6																																																																																					514
AGC/CTG	-	-	72	37	18	7	3			1																																																																																																																			138
AGG/CCT	-	-	50	23	10	5	4	2	3	1	2					1		1		2																																																																																																									104
ATC/ATG	-	-	440	214	136	69	48	30	17	16	9	10	3	8	7	5	5	3	4	2	2	6	3	1	1	1		1	2	2	2		3																																																																																												1050
CCG/CGG	-	-	2	1																																																																																																																									3
AAAC/GTTT	-	106	18	2	2	4	1	1		1																																																																																																																			135
AAAG/CTTT	-	128	28	12	2			1	1	2	2	2																																																																																																																	178
AAAT/ATTT	-	246	31	2	3				1																																																																																																																				283
AACC/GGTT	-	9	4		3	1		1																																																																																																																					18
AACG/CGTT	-		1	2																																																																																																																									3
AACT/AGTT	-	10	1																																																																																																																										11
AAGC/CTTG	-	10																																																																																																																											10
AAGG/CCTT	-	41	14	7	1	1	1				1	1										1																																																																																																							68
AAGT/ACTT	-	11	5																																																																																																																										16
AATC/ATTG	-	90	29	6	1																																																																																																																								126
AATG/ATTC	-	208	64	47	6	2	2	1	2	2	1	2		1																																																																																																															338
AATT/AATT	-	235	24	5																																																																																																																									264
ACAG/CTGT	-	29	16	7	1	3																																																																																																																							56
ACAT/ATGT	-	189	69	31	16	8	5	5	3	2	3	1	1	1		2	2	1	1	2	1				1				1																																																																																																345
ACCC/GGGT	-	13	4																																																																																																																										17
ACCT/AGGT	-	5	2	3		1																																																																																																																							11
ACGC/CGTG	-		1																																																																																																																										1
ACGG/CCGT	-	5	5		1	1																																																																																																																							12
ACGT/ACGT	-	3																																																																																																																											3
ACTC/AGTG	-	1		2	1									1																																																																																																															5
ACTG/AGTC	-	4	1	3		1		1		1	1																																																																																																																		12
AGAT/ATCT	-	48	29	12	6	3		1	1					3	1					1																																																																																																									105
AGCC/CTGG	-		3																																																																																																																										3
AGCT/AGCT	-	2																																																																																																																											2
AGGG/CCCT	-	12	2	2																																																																																																																									16
ATCC/ATGG	-	141	58	26	9	10	7	5	6	1	1																	1																																																																																																	265
ATCG/ATCG	-	5	1	1																																																																																																																									7
ATGC/ATGC	-	7																																																																																																																											7
AAAAC/GTTTT	114	9	3																																																																																																																										126
AAAAG/CTTTT	173	12																																																																																																																											185
AAAAT/ATTTT	288	20	2																																																																																																																										310
AAACC/GGTTT	5	3	2		1	2					1																																																																																																																		14
AAACG/CGTTT	1	2																																																																																																																											3
AAACT/AGTTT	10																																																																																																																												10
AAAGC/CTTTG	4		1																																																																																																																										5
AAAGG/CCTTT	38	5	2																																																																																																																										45
AAAGT/ACTTT	15	1	1																																																																																																																										17
AAATC/ATTTG	36	4																																																																																																																											40
AAATG/ATTTC	292	40	11	3	1					1																																																																																																																			348
AAATT/AATTT	346	19	1																																																																																																																										366
AACAC/GTGTT	15				1																																																																																																																								16
AACAG/CTGTT	2																																																																																																																												2
AACAT/ATGTT	5																																																																																																																												5
AACCG/CGGTT	1																																																																																																																												1
AACCT/AGGTT	1																																																																																																																												1
AACGG/CCGTT	28	11	4		2																																																																																																																								45
AACGT/ACGTT	3	3																																																																																																																											6
AACTC/AGTTG	21	4				1																																																																																																																							26
AACTG/AGTTC	7																																																																																																																												7
AACTT/AAGTT	6																																																																																																																												6
AAGAC/CTTGT	1																																																																																																																												1
AAGAG/CTCTT	20	5																																																																																																																											25
AAGAT/ATCTT	11	2																																																																																																																											13
AAGCC/CTTGG	1																																																																																																																												1
AAGCT/AGCTT	3	1																																																																																																																											4
AAGGG/CCCTT	9	1																																																																																																																											10
AAGGT/ACCTT	4																																																																																																																												4
AAGTG/ACTTC	18	3		1																																																																																																																									22
AATAC/ATTGT	11	1																					1																																																																																																						13
AATAG/ATTCT	30	4	3																																																																																																																										37
AATAT/ATATT	78	8	1	1	2								1																																																																																																																91
AATCC/ATTGG	12	1	2			1																																																																																																																							16
AATCG/ATTCG	11	1																																																																																																																											12
AATCT/AGATT	11	3		2						1																																																																																																																			17
AATGC/ATTGC	20	3																																																																																																																											23
AATGG/ATTCC	5981	2564	1041	395	190	184	161	82	50	22	7	4	1																																																																																																																10682
AATGT/ACATT	37	6	2			2	1																																																																																																																						48
AATTC/AATTG	99	13	4																																																																																																																										116
ACACC/GGTGT	3	1																																																																																																																											4
ACACG/CGTGT	1																																																																																																																												1
ACACT/AGTGT	5	1	1																																																																																																																										7
ACAGC/CTGTG	1																																																																																																																												1
ACAGG/CCTGT	3																																																																																																																												3
ACAGT/ACTGT	4																																																																																																																												4
ACATC/ATGTG	14	1																																																																																																																											15
ACATG/ATGTC	7																																																																																																																												7
ACCAT/ATGGT	6	1																																																																																																																											7
ACCCC/GGGGT		1		1																																																																																																																									2
ACCCT/AGGGT	1	1																																																																																																																											2
ACCGC/CGGTG	1																																																																																																																												1
ACCTC/AGGTG	1																																																																																																																												1
ACCTG/AGGTC	1	1	1																																																																																																																										3
ACGAT/ATCGT	4	1	1																																																																																																																										6
ACGGG/CCCGT	4	2																																																																																																																											6
ACGTC/ACGTG	2	1																																																																																																																											3
ACTAT/AGTAT	11	1																																																																																																																											12
ACTCC/AGTGG	1347	213	10	2	2																																																																																																																								1574
ACTCT/AGAGT	5																																																																																																																												5
ACTGC/AGTGC	1																																																																																																																												1
ACTGG/AGTCC	17	1																																																																																																																											18
AGAGC/CTCTG	2																																																																																																																												2
AGAGG/CCTCT	4	2	1																																																																																																																										7
AGATC/ATCTG	27	1		1																																																																																																																									29
AGATG/ATCTC	3		1																																																																																																																										4
AGCAT/ATGCT	3																																																																																																																												3
AGCCG/CGGCT	1																																																																																																																												1
AGCCT/AGGCT	3																																																																																																																												3
AGCTC/AGCTG	8	2	1																																																																																																																										11
AGGAT/ATCCT	3																																																																																																																												3
AGGGG/CCCCT	6	1																																																																																																																											7
ATATC/ATATG	61	8	6	3		1																																																																																																																							79
ATCCC/ATGGG	9	3																																																																																																																											12
ATCCG/ATCGG	3																																																																																																																												3
ATCGC/ATGCG	1																																																																																																																												1
ATGCC/ATGGC	1																																																																																																																												1
CCCCG/CGGGG	1	1																																																																																																																											2
AAAAAC/GTTTTT	40	1																																																																																																																											41
AAAAAG/CTTTTT	27																																																																																																																												27
AAAAAT/ATTTTT	52	3																																																																																																																											55
AAAACC/GGTTTT	2																																																																																																																												2
AAAACG/CGTTTT	1																																																																																																																												1
AAAAGC/CTTTTG	3																																																																																																																												3
AAAAGG/CCTTTT	7																																																																																																																												7
AAAAGT/ACTTTT	3																																																																																																																												3
AAAATC/ATTTTG	2																																																																																																																												2
AAAATG/ATTTTC	24	1	1	3	1		1	1											1																																																																																																										33
AAAATT/AATTTT	56																																																																																																																												56
AAACAC/GTGTTT	3		1					1																																																																																																																					5
AAACAG/CTGTTT	1																																																																																																																												1
AAACAT/ATGTTT	1																																																																																																																												1
AAACCC/GGGTTT	1																																																																																																																												1
AAACGC/CGTTTG					1																																																																																																																								1
AAACGT/ACGTTT	2																																																																																																																												2
AAACTC/AGTTTG	1	1																																																																																																																											2
AAACTG/AGTTTC	3																																																																																																																												3
AAACTT/AAGTTT	2																																																																																																																												2
AAAGAG/CTCTTT	50	9	1	1																																																																																																																									61
AAAGAT/ATCTTT	4																																																																																																																												4
AAAGCC/CTTTGG	1																																																																																																																												1
AAAGGG/CCCTTT	1																																																																																																																												1
AAAGGT/ACCTTT	1																																																																																																																												1
AAAGTG/ACTTTC	2	1																																																																																																																											3
AAATAC/ATTTGT	4																																																																																																																												4
AAATAG/ATTTCT	3																																																																																																																												3
AAATAT/ATATTT	16				1																																																																																																																								17
AAATCC/ATTTGG	2																																																																																																																												2
AAATCT/AGATTT	1																																																																																																																												1
AAATGC/ATTTGC	1	1																																																																																																																											2
AAATGG/ATTTCC	9																																																																																																																												9
AAATGT/ACATTT	2																																																																																																																												2
AAATTC/AATTTG	9																																																																																																																												9
AAATTG/AATTTC	30	2																																																																																																																											32
AAATTT/AAATTT	33	2																																																																																																																											35
AACAAG/CTTGTT	1	1																																																																																																																											2
AACAAT/ATTGTT	33	4	1																																																																																																																										38
AACACC/GGTGTT	1																																																																																																																												1
AACAGC/CTGTTG	13	3																																																																																																																											16
AACAGT/ACTGTT	2																																																																																																																												2
AACATC/ATGTTG	3		1																																																																																																																										4
AACATT/AATGTT	3																																																																																																																												3
AACCAC/GGTTGT	1																																																																																																																												1
AACCAT/ATGGTT			1																																																																																																																										1
AACCGC/CGGTTG		1																																																																																																																											1
AACCTC/AGGTTG	1																																																																																																																												1
AACGAC/CGTTGT	6	1	1																																																																																																																										8
AACGAT/ATCGTT	2																																																																																																																												2
AACGTG/ACGTTC	2																																																																																																																												2
AACTAC/AGTTGT	5	4																																																																																																																											9
AACTAG/AGTTCT	1																																																																																																																												1
AACTCC/AGTTGG	3																																																																																																																												3
AACTGC/AGTTGC	3																																																																																																																												3
AACTTC/AAGTTG	4																																																																																																																												4
AACTTG/AAGTTC	1																																																																																																																												1
AAGACG/CGTCTT	2																																																																																																																												2
AAGAGG/CCTCTT	9	2																																																																																																																											11
AAGAGT/ACTCTT	1																																																																																																																												1
AAGATC/ATCTTG		1																																																																																																																											1
AAGATG/ATCTTC	6																																																																																																																												6
AAGATT/AATCTT	1																																																																																																																												1
AAGCAG/CTGCTT	2																																																																																																																												2
AAGCAT/ATGCTT	2																																																																																																																												2
AAGCCT/AGGCTT	20	4	2	2	6	2	1	1																																																																																																																					38
AAGCGG/CCGCTT	1																																																																																																																												1
AAGCTG/AGCTTC	1																																																																																																																												1
AAGGAC/CCTTGT	2																																																																																																																												2
AAGGAG/CCTTCT	4	1																																																																																																																											5
AAGGAT/ATCCTT		1																																																																																																																											1
AAGTAG/ACTTCT	2																																																																																																																												2
AAGTGC/ACTTGC		1																																																																																																																											1
AATACT/AGTATT	6																																																																																																																												6
AATAGC/ATTGCT	4																																																																																																																												4
AATAGT/ACTATT	21	5	1																																																																																																																										27
AATATC/ATATTG	2																																																																																																																												2
AATATT/AATATT	3																																																																																																																												3
AATCAC/ATTGTG		1																																																																																																																											1
AATCAG/ATTCTG	3																																																																																																																												3
AATCAT/ATGATT	5																																																																																																																												5
AATCGC/ATTGCG	1																																																																																																																												1
AATCTG/AGATTC	1																																																																																																																												1
AATGAC/ATTGTC	3	1																																																																																																																											4
AATGAT/ATCATT	92	9	2	1																																																																																																																									104
AATGCT/AGCATT	1																																																																																																																												1
AATGGC/ATTGCC	1																																																																																																																												1
AATGGT/ACCATT	2																																																																																																																												2
AATGTG/ACATTC	3			1																																																																																																																									4
AATTAC/AATTGT	2	1																																																																																																																											3
AATTAG/AATTCT	3																																																																																																																												3
AATTAT/AATTAT	14																																																																																																																												14
AATTCC/AATTGG	1																																																																																																																												1
ACACAG/CTGTGT	10	2																																																																																																																											12
ACACAT/ATGTGT	182	41	11	1																																																																																																																									235
ACACCC/GGGTGT	1	2																																																																																																																											3
ACACGC/CGTGTG	3	1																																																																																																																											4
ACACGT/ACGTGT	1																																																																																																																												1
ACACTC/AGTGTG	1																																																																																																																												1
ACAGAG/CTCTGT	4																																																																																																																												4
ACAGAT/ATCTGT	2																																																																																																																												2
ACAGCC/CTGTGG	2																																																																																																																												2
ACAGCT/AGCTGT	1																																																																																																																												1
ACAGGG/CCCTGT	3																																																																																																																												3
ACAGGT/ACCTGT	1																																																																																																																												1
ACATAG/ATGTCT	1																																																																																																																												1
ACATAT/ATATGT	20	3	1			1																																																																																																																							25
ACATCT/AGATGT	1																																																																																																																												1
ACATGC/ATGTGC	1																																																																																																																												1
ACCACT/AGTGGT	1	1																																																																																																																											2
ACCAGC/CTGGTG	2	1																																																																																																																											3
ACCAGT/ACTGGT	1																																																																																																																												1
ACCATC/ATGGTG	55	7		1																																																																																																																									63
ACCCCC/GGGGGT		2																																																																																																																											2
ACCCGT/ACGGGT	1																																																																																																																												1
ACCCTC/AGGGTG	1																																																																																																																												1
ACCGCC/CGGTGG	1																																																																																																																												1
ACCGTC/ACGGTG	1																																																																																																																												1
ACCTCC/AGGTGG	5	1																																																																																																																											6
ACCTCT/AGAGGT		1																																																																																																																											1
ACCTGC/AGGTGC	1																																																																																																																												1
ACGAGG/CCTCGT		1																																																																																																																											1
ACGATC/ATCGTG	2																																																																																																																												2
ACGATG/ATCGTC	3	1																																																																																																																											4
ACGGAT/ATCCGT	1																																																																																																																												1
ACTAGC/AGTGCT	3																																																																																																																												3
ACTATC/AGTGAT	5	1	1																																																																																																																										7
ACTCAT/AGTATG	1																																																																																																																												1
ACTCCT/AGGAGT	3																																																																																																																												3
ACTCTC/AGAGTG	2																																																																																																																												2
ACTGAT/AGTATC	2																																																																																																																												2
ACTGCT/AGCAGT	13	1																																																																																																																											14
AGAGAT/ATCTCT					1																																																																																																																								1
AGAGGG/CCCTCT	6	2																																																																																																																											8
AGATAT/ATATCT	4	1																																																																																																																											5
AGATCT/AGATCT	1																																																																																																																												1
AGCATC/ATGCTG	3	1																																																																																																																											4
AGCCCC/CTGGGG	1																																																																																																																												1
AGCGGC/CCGCTG	1																																																																																																																												1
AGCTGC/AGCTGC	3																																																																																																																												3
AGGATG/ATCCTC	1																																																																																																																												1
AGGGGG/CCCCCT	1																																																																																																																												1
ATCATG/ATCATG	2																																																																																																																												2
ATCCCG/ATCGGG	1																																																																																																																												1
CCCCCG/CGGGGG		1																																																																																																																											1
