Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_947561605.2/fasta/hub_GCA_947561605.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6191
Total size of examined sequences (bp):           76810040
Total number of identified SSRs:                 35782
Number of SSR containing sequences:              4533
Number of sequences containing more than 1 SSR:  3950
Number of SSRs present in compound formation:    15194


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4626
2	7696
3	4851
4	2040
5	15450
6	1119

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	421	305	266	200	194	150	110	106	83	62	53	44	43	34	20	19	14	13	13	12	15	2	6	2	7	4	6	7	3		5	2				2					1			2		2			1					1			1	1																																																	1	2233
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	3	3	1	2	2	1		1	4			1	1		3	1					1		1				1	2			1		2	1			1						1				1				1	2		1	2											1	1							1		1								1																			1				50
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	3	3	3	1		2	2	1	1	1	1	1	3	2	3	1	2	1			2			1			1		1	2	1			1		2				1		1		1				1				1		1	1			1		1							1						1				1																							1					1	1	61
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	422	334	285	229	176	154	120	89	65	57	57	44	30	34	28	17	17	17	15	14	7	10	13	3	6	4	5	5		1	2	1	1	2		3	2	1	1			1	1						1		1			2										1														1																										1	1	1		2282
AC	-	-	-	291	158	140	100	65	42	40	25	31	16	18	12	11	13	8	4	7	5	4	1	8	2	1	4	4	3	3		2	1	1	1	4	1		2		1					2			1		2										2																																																																1036
AG	-	-	-	177	137	130	103	58	40	12	19	7	5	2	3	4	1			1	2																																																																																																								701
AT	-	-	-	439	301	240	178	114	96	43	36	17	12	2	11	6	3		2																																																																																																										1500
CA	-	-	-	98	49	32	20	27	18	12	9	5	4	7	4	6	2	3	4	4	2		3	2			1	3								1		1	1		1	1			1			1								1			2	1																																																																	326
CG	-	-	-	1	1																																																																																																																								2
CT	-	-	-	123	72	72	50	33	15	15	6	9	3	1	5	1		1	1																				1																																																																																						408
GA	-	-	-	106	73	37	35	34	20	6	8	7	4			1				1																																																																																																									332
GC	-	-	-	1	1																																																																																																																								2
GT	-	-	-	146	70	44	30	18	18	10	10	4	7	4	3	4	5	6	3	2	3	1					5	2	1	1	1	1				1		1							2	1					1																																																																										405
TA	-	-	-	364	260	146	114	84	62	38	14	15	6	9	7	3	2	3	1	1	1	1	1																																																																																																						1132
TC	-	-	-	190	118	97	75	66	28	21	12	6	6	5	2	4	1	2				1	1	1		2																	1																																																																																		639
TG	-	-	-	356	195	141	109	80	65	34	34	28	28	15	16	9	7	11	13	4	9	6	6	4	3	3	3	4	2	1	2	1	1	2		1	2		2	2	1	2		1	1	1			2	1		1			1				1		1	1																																																															1213
AAC	-	-	39	17	6	5	3	2					1	1							1																																																																																																								75
AAG	-	-	13	4	3	1																																																																																																																							21
AAT	-	-	177	73	34	20	13	11	4	3	4	6	7	5	2	3	6	4	8	2	2	1	1	5	1	2	1	1	1			1		1		1	1	1	1																																																																																						403
ACA	-	-	24	15	8	3	2	1	3		1		1																																																																																																																58
ACC	-	-	14	6	3	2	1	1																																																																																																																					27
ACG	-	-			1																																																																																																																								1
ACT	-	-	22	19	7	4	1	2	1	2		1	2	1				1	1		1																																																																																																								65
AGA	-	-	11	3	2	2																																																																																																																							18
AGC	-	-	12	1	3	1			1																																																																																																																				18
AGG	-	-	4	6	2	1				1																																																																																																																			14
AGT	-	-	28	12	12	3	9	1	3		2							1																						2	1																																																																																				74
ATA	-	-	93	50	20	4	7	9	9	2	1	6	1	2	2	4	2	2	4	3	2	1	1		4	1	1	2	2	1	1	2				2		1		2																																																																																					244
ATC	-	-	86	47	17	17	4	3	4	2	2	3	1	4		1		1	1						1	1			1																																																																																																196
ATG	-	-	85	35	22	18	9	7	3	3	4	2	1	1	1						1					1																																																																																																			193
ATT	-	-	174	62	32	13	13	4	5	6	4	4	8	2	4	7	1	2	4	7	2	5	4		3	3		1	1			1				1	1		3	3																																																																																					380
CAA	-	-	42	28	19	7	7	4	1		1		2	1	2						1																																																																																																								115
CAC	-	-	13	9	2	3	1											1																																																																																																											29
CAG	-	-	15	9	4	1			1																																																																																																																				30
CAT	-	-	66	32	30	8	6	6	2	1	1	1		3	1	1	2				1			2						1										1																																																																																					165
CCA	-	-	19	8	3	4		1																																																																																																																					35
CCT	-	-	7	3	2		1		1	1																																																																																																																			15
CGA	-	-		1																																																																																																																									1
CGT	-	-	2																																																																																																																										2
CTA	-	-	28	18	12	3	3	2	1	3	3	1	1	1										1																																																																																																					77
CTC	-	-	14	1	2	1			1																																																																																																																				19
CTG	-	-	11	6	1		1																																																																																																																						19
CTT	-	-	18	6	4	4																	1																																																																																																						33
GAA	-	-	17	7	2																																																																																																																								26
GAC	-	-	1																																																																																																																										1
GAG	-	-	9	7	2																																																																																																																								18
GAT	-	-	45	24	20	4	10	2	3	2		2	1		1	1										1																																																																																																			116
GCA	-	-	7	3	5	1				1																																																																																																																			17
GCT	-	-	5	3	2	1																																																																																																																							11
GGA	-	-	2	4	2	2			1																																																																																																																				11
GGT	-	-	22	7	6	3	2	1		1					1																																																																																																														43
GTA	-	-	13	16	8	3	4	5		1		1		1							1	1													1																																																																																										55
GTG	-	-	28	10	10	5	2	1																																																																																																																					56
GTT	-	-	30	12	9	5	3		1	1																																																																																																																			61
TAA	-	-	145	94	37	25	9	3	8	9	6	8	7	7	7	5	5	3	2	1	7	4	3	7	3	4	2	3	5	4		1			2	1	1		3	4																																																																																					435
TAC	-	-	44	21	11	7	9	1	4		1	1	1	1		1			1					1					1									2																																																																																							107
TAG	-	-	25	15	6	3	6	2	1	2														1					1											1																																																																																					63
TAT	-	-	119	55	26	12	15	7	4		5	6	5	7	1	6		5	5	3	3	3	3	1		6	1	1	1		2	2	1	2			2		2																																																																																						311
TCA	-	-	49	17	15	17	4	7	1	1	2	1		1			2	2					1	1							1																																																																																														122
TCC	-	-	14	2	5		3	1	2			1																																																																																																																	28
TCG	-	-	3	2	1																																																																																																																								6
TCT	-	-	6	4	1	2					1																																																																																																																		14
TGA	-	-	73	39	26	16	6	6	3	3	2	1	2	2	3		1			2	3	1															1				1																																																																																				191
TGC	-	-	14	9	4	4					1																																																																																																																		32
TGG	-	-	59	22	9	6	1																																																																																																																						97
TGT	-	-	37	20	7	2	6	4		2			2	1	2			1		1	1									1																																																																																															87
TTA	-	-	175	78	38	23	22	14	4	9	9	5	6	12	11	3	6	5	7	9	6	10	7	5	8	3	3	2		1	1	2	1		1	1		1	2	2				1																																																																																	493
TTC	-	-	13	6	2	3												1																																																																																																											25
TTG	-	-	46	18	14	9	6		1		1	1								1									1																																																																																																98
AAAC	-	27	9	2	1																																																																																																																								39
AAAG	-	22	4	1		1																																																																																																																							28
AAAT	-	56	10	2																																																																																																																									68
AACA	-	4	1				1																																																																																																																						6
AACC	-	3		1																																																																																																																									4
AACG	-		1																																																																																																																										1
AAGA	-	8	1																																																																																																																										9
AAGC	-	3																																																																																																																											3
AAGG	-	5		1		1		1																																																																																																																					8
AAGT	-	4																																																																																																																											4
AATA	-	22	6																																																																																																																										28
AATC	-	18	2	1	1																																																																																																																								22
AATG	-	34	16	1	2																																																																																																																								53
AATT	-	65	9																																																																																																																										74
ACAA	-	8	1			1																																																																																																																							10
ACAG	-	6	1	1																																																																																																																									8
ACAT	-	43	7	8	3	1	1				1																		1																																																																																																65
ACCA	-	1																																																																																																																											1
ACCT	-			1																																																																																																																									1
ACGG	-		1																																																																																																																										1
ACTA	-		1																																																																																																																										1
ACTG	-	1																																																																																																																											1
AGAA	-	13	1	2	1																																																																																																																								17
AGAC	-	3	1	4																																																																																																																									8
AGAT	-	3			1																																																																																																																								4
AGGA	-	2	2																																																																																																																										4
AGTA	-	2	1																																																																																																																										3
AGTC	-				1																																																																																																																								1
AGTG	-	8	2									1																																																																																																																	11
ATAA	-	21	1																																																																																																																										22
ATAC	-	11	9	7	1					1			1		1		1																																																																																																												32
ATAG	-	10	3				1																																																																																																																						14
ATCA	-	12	2	2	1	1																																																																																																																							18
ATCC	-	15	2	6				1		1																																																																																																																			25
ATCG	-	3																																																																																																																											3
ATCT	-	8	8	2	2		1																																																																																																																						21
ATGA	-	17	8	1		1								1																																																																																																															28
ATGC	-	6																																																																																																																											6
ATGG	-	16	6	2	3																																																																																																																								27
ATGT	-	16	11	3	1	1				1	2																																																																																																																		35
ATTA	-	55	5																																																																																																																										60
ATTC	-	18	5	3	2																																																																																																																								28
ATTG	-	16	3	1																																																																																																																									20
ATTT	-	36	5																																																																																																																										41
CAAA	-	6	1																																																																																																																										7
CAAC	-		1	1		1																																																																																																																							3
CAAG	-	1																																																																																																																											1
CAAT	-	16	2	1																																																																																																																									19
CACC	-	2																																																																																																																											2
CACG	-	1																																																																																																																											1
CAGA	-			1																																																																																																																									1
CATA	-	9	4	1							1																																																																																																																		15
CATC	-	27	13	6	1	1		1	1								1																																																																																																												51
CATG	-	2	1																																																																																																																										3
CATT	-	28	13	2	2	1		1																																																																																																																					47
CCAC	-	7	3																																																																																																																										10
CCAT	-	18	6	3	1		1																																																																																																																						29
CCCA	-	1																																																																																																																											1
CCTC	-	1																																																																																																																											1
CCTT	-	1									1																																																																																																																		2
CGGA	-	1																																																																																																																											1
CGTC	-	1																																																																																																																											1
CTAC	-	1	1			1																																																																																																																							3
CTAG	-	1																																																																																																																											1
CTAT	-	3		2	1				1																																																																																																																				7
CTCC	-	1																																																																																																																											1
CTGA	-	1																																																																																																																											1
CTGT	-	6																																																																																																																											6
CTTA	-	1																																																																																																																											1
CTTC	-	2					1	1																																																																																																																					4
CTTG	-	1																																																																																																																											1
CTTT	-	9	2																																																																																																																										11
GAAA	-	13	1																																																																																																																										14
GAAC	-		1																																																																																																																										1
GAAG	-	6	1	1	1																																																																																																																								9
GAAT	-	18	6	1		1									1																																																																																																														27
GACA	-	2	1	1																																																																																																																									4
GACT	-	1																																																																																																																											1
GAGG	-	1																																																																																																																											1
GATA	-	6	4	2			1	1	2	2																																																																																																																			18
GATC	-	2																																																																																																																											2
GATG	-	27	8	5	2	3		2	1																																																																																																																				48
GATT	-	3	1	1																																																																																																																									5
GCAA	-	2	1																																																																																																																										3
GCAT	-		1																																																																																																																										1
GGAA	-	2	1																																																																																																																										3
GGAC	-	1																																																																																																																											1
GGAG	-	3																																																																																																																											3
GGAT	-	9	7	1			1		1	1	1																																																																																																																		21
GGGT	-	1			1																																																																																																																								2
GGTA	-	2	1																																																																																																																										3
GGTG	-	8	1																																																																																																																										9
GTAC	-		1																																																																																																																										1
GTAT	-	15	3	3	3		1					1																																																																																																																	26
GTCA	-			1			1																																																																																																																						2
GTCT	-	1	1			1																																																																																																																							3
GTGG	-	2																																																																																																																											2
GTTA	-	2																																																																																																																											2
GTTG	-						1		1																																																																																																																				2
GTTT	-	6		1	1																																																																																																																								8
TAAA	-	12																																																																																																																											12
TAAC	-	1																																																																																																																											1
TAAG	-	1	1																																																																																																																										2
TAAT	-	53	6																																																																																																																										59
TACA	-	4	1	1	1		1		1	3																																																																																																																			12
TACG	-	2																																																																																																																											2
TACT	-	1																																																																																																																											1
TAGA	-	3	2	1			2																																																																																																																						8
TAGC	-	1																																																																																																																											1
TAGG	-	2	1	1																																																																																																																									4
TATC	-	7	3		1		1																																																																																																																						12
TATG	-	30	9	4	2	1		1																																																																																																																					47
TATT	-	21	2																																																																																																																										23
TCAA	-	4	1																																																																																																																										5
TCAC	-	2																																																																																																																											2
TCAT	-	16	9		1		1																																																																																																																						27
TCCA	-	7	7	5	1		4	1																																																																																																																					25
TCCC	-	3	1																																																																																																																										4
TCCT	-	5	2	1																																																																																																																									8
TCGA	-		1																																																																																																																										1
TCTA	-	5	1		2			2			1																																																																																																																		11
TCTG	-	5	1	1																																																																																																																									7
TCTT	-	15	4	2	2																		1																																																																																																						24
TGAA	-	19	7	5	2	1	1																																																																																																																						35
TGAC	-	3	1	2					1																																																																																																																				7
TGAG	-	1			1																																																																																																																								2
TGAT	-	10	2	2																																																																																																																									14
TGCG	-	1		1																																																																																																																									2
TGGA	-	22	12	3		1		2		1																																																																																																																			41
TGGC	-		1																																																																																																																										1
TGGG	-	2	1	1																																																																																																																									4
TGGT	-		1	1																																																																																																																									2
TGTA	-	21	11	4			1	1	1					1																1																																																																																															41
TGTC	-	11	3	1																																																																																																																									15
TGTT	-	14	1		1																																																																																																																								16
TTAA	-	47	10																																																																																																																										57
TTAC	-	2																																																																																																																											2
TTAG	-	4	1																																																																																																																										5
TTAT	-	23	1																																																																																																																										24
TTCA	-	13	5	6	1						1																																																																																																																		26
TTCC	-	6	3	1																																																																																																																									10
TTCG	-			1																																																																																																																									1
TTCT	-	10		1	2									1																																																																																																															14
TTGA	-	4	2																																																																																																																										6
TTGG	-	1			2	1																																																																																																																							4
TTGT	-	10	3	2																																																																																																																									15
TTTA	-	27	9																																																																																																																										36
TTTC	-	19	3	4							1																																																																																																																		27
TTTG	-	16	3																																																																																																																										19
AAAAC	27	4																																																																																																																											31
AAAAG	15	1																																																																																																																											16
AAAAT	65	8																																																																																																																											73
AAACA	7																																																																																																																												7
AAACC	1																																																																																																																												1
AAACG	1																																																																																																																												1
AAAGA	10																																																																																																																												10
AAAGC	1																																																																																																																												1
AAAGG	4																																																																																																																												4
AAAGT	1	1																																																																																																																											2
AAATA	25	1																																																																																																																											26
AAATC	4																																																																																																																												4
AAATG	35	5																																																																																																																											40
AAATT	70	3																																																																																																																											73
AACAA	5	1																																																																																																																											6
AACAC	1																																																																																																																												1
AACCA					1																																																																																																																								1
AACGG	2	1	2																																																																																																																										5
AACTA	2																																																																																																																												2
AACTC		1																																																																																																																											1
AAGAA	10	1																																																																																																																											11
AAGAG	1																																																																																																																												1
AAGAT	1																																																																																																																												1
AAGGC		1																																																																																																																											1
AAGGG	1																																																																																																																												1
AAGGT	1																																																																																																																												1
AAGTA	5																																																																																																																												5
AATAA	18	2																																																																																																																											20
AATAG	1	1																																																																																																																											2
AATAT	5																																																																																																																												5
AATCA	4																																																																																																																												4
AATCC	1																																																																																																																												1
AATCG	2																																																																																																																												2
AATCT	1			1																																																																																																																									2
AATGA	18	3		1																																																																																																																									22
AATGC	1																																																																																																																												1
AATGG	738	289	128	42	30	26	20	15	8	2	3				1																																																																																																														1302
AATGT	11	2	1	1		1																																																																																																																							16
AATTA	31	2																																																																																																																											33
AATTC	8																																																																																																																												8
AATTG	9	1																																																																																																																											10
AATTT	39	4																																																																																																																											43
ACAAA	5																																																																																																																												5
ACAAG	1																																																																																																																												1
ACAAT	2																																																																																																																												2
ACACG	1																																																																																																																												1
ACAGA	1																																																																																																																												1
ACATA	2																																																																																																																												2
ACATC	1																																																																																																																												1
ACATG	1																																																																																																																												1
ACATT	3																																																																																																																												3
ACCAA		1																																																																																																																											1
ACCAT								1																																																																																																																					1
ACCCC	1																																																																																																																												1
ACCTT	1																																																																																																																												1
ACGAA				1																																																																																																																									1
ACGGA	2	1																																																																																																																											3
ACGTA	1																																																																																																																												1
ACTCA		1																																																																																																																											1
ACTCC	72	9																																																																																																																											81
ACTGG	1																																																																																																																												1
ACTGT	1																																																																																																																												1
ACTTC	1																																																																																																																												1
ACTTT		1																																																																																																																											1
AGAAA	12	1																																																																																																																											13
AGAAG	3																																																																																																																												3
AGAAT	4																																																																																																																												4
AGAGA	5	1																																																																																																																											6
AGAGG	2																																																																																																																												2
AGATC	3																																																																																																																												3
AGATT	1	1																																																																																																																											2
AGCTA		1																																																																																																																											1
AGCTG	2	1																																																																																																																											3
AGGGA	3																																																																																																																												3
AGGGG	1																																																																																																																												1
AGTAA	2																																																																																																																												2
AGTCC	6	1																																																																																																																											7
AGTCG	1																																																																																																																												1
AGTGA	1																																																																																																																												1
AGTGG	158	20		1																																																																																																																									179
AGTGT	2																																																																																																																												2
AGTTA	2																																																																																																																												2
AGTTT	2																																																																																																																												2
ATAAA	22	2	1																																																																																																																										25
ATAAG	3	1																																																																																																																											4
ATAAT	10	2																																																																																																																											12
ATACG	1		1																																																																																																																										2
ATAGA	1																																																																																																																												1
ATAGT	1																																																																																																																												1
ATATA	13	1			1																																																																																																																								15
ATATC	7		2																																																																																																																										9
ATATG	5		1																																																																																																																										6
ATATT	4																																																																																																																												4
ATCAA	1																																																																																																																												1
ATCAC	1																																																																																																																												1
ATCAG	1																																																																																																																												1
ATCAT	6	2																																																																																																																											8
ATCCA	2																																																																																																																												2
ATCCC	2																																																																																																																												2
ATCCT	1																																																																																																																												1
ATCGA	1																																																																																																																												1
ATCTC	2																																																																																																																												2
ATCTG	7																																																																																																																												7
ATCTT	1																																																																																																																												1
ATGAA	19	1	1			1																																																																																																																							22
ATGAC	2																																																																																																																												2
ATGAG			1																																																																																																																										1
ATGAT	7	1																																																																																																																											8
ATGGA	247	125	42	27	14	16	8	7	4	1																																																																																																																			491
ATGGG	2																																																																																																																												2
ATGGT	1																																																																																																																												1
ATGTG	1	1																																																																																																																											2
ATTAA	30	1																																																																																																																											31
ATTAC	2		1		1																																																																																																																								4
ATTAG	4	1				1																																																																																																																							6
ATTAT	5		1			1																																																																																																																							7
ATTCA	16	3	1																																																																																																																										20
ATTCC	858	421	215	115	42	57	38	27	18	10	1	4				1																																																																																																													1807
ATTCG	3																																																																																																																												3
ATTCT	7																																																																																																																												7
ATTGA	6	1																																																																																																																											7
ATTGG					1																																																																																																																								1
ATTGT	1																																																																																																																												1
ATTTA	21	2		1																																																																																																																									24
ATTTC	33	3			1																																																																																																																								37
ATTTG	4	1																																																																																																																											5
ATTTT	52	3																																																																																																																											55
CAAAA	5																																																																																																																												5
CAAAT	3	1																																																																																																																											4
CAACT	4																																																																																																																												4
CAATA	1																																																																																																																												1
CAATC	3																																																																																																																												3
CAATG	3																																																																																																																												3
CAATT	3																																																																																																																												3
CACTC	69	11																																																																																																																											80
CACTT	1	1																																																																																																																											2
CAGAT	1																																																																																																																												1
CAGCA	1																																																																																																																												1
CAGTC	1																																																																																																																												1
CATAA	1																																																																																																																												1
CATAT	8	1																																																																																																																											9
CATCG	1																																																																																																																												1
CATGC				1																																																																																																																									1
CATTA	9						1																																																																																																																						10
CATTC	714	305	128	59	30	24	22	8	5	3																																																																																																																			1298
CATTG	8	1																																																																																																																											9
CATTT	29	3	2	1		1																																																																																																																							36
CCACT	31	14																																																																																																																											45
CCAGT	1	1																																																																																																																											2
CCATA	3						1																																																																																																																						4
CCATT	208	87	33	14	9	9	5	3	1	1																																																																																																																			370
CCCAC	1																																																																																																																												1
CCCCT	3																																																																																																																												3
CCCGT	1																																																																																																																												1
CCTAC			1																																																																																																																										1
CCTCT		1																																																																																																																											1
CCTTC	1																																																																																																																												1
CGAAT	1																																																																																																																												1
CGATC	2																																																																																																																												2
CGGAA	2																																																																																																																												2
CGGGG	1																																																																																																																												1
CGTCA		1																																																																																																																											1
CGTTA	1																																																																																																																												1
CGTTC	2	2	1																																																																																																																										5
CTAAG	1																																																																																																																												1
CTACT	2																																																																																																																												2
CTATC	1																																																																																																																												1
CTATT	2		1																																																																																																																										3
CTCCA	50	3																																																																																																																											53
CTCCC	2																																																																																																																												2
CTCTT	2																																																																																																																												2
CTGAA	1																																																																																																																												1
CTGAG	1		1																																																																																																																										2
CTGAT	1																																																																																																																												1
CTGTC	1																																																																																																																												1
CTTAA	1																																																																																																																												1
CTTAT	2																																																																																																																												2
CTTCA	3																																																																																																																												3
CTTCT	1																																																																																																																												1
CTTTC	10	1																																																																																																																											11
CTTTG	1																																																																																																																												1
CTTTT	15	1																																																																																																																											16
GAAAA	16	2		1																																																																																																																									19
GAAAG		1																																																																																																																											1
GAAAT	38	4																																																																																																																											42
GAACA	1																																																																																																																												1
GAACG	4	2	2																																																																																																																										8
GAACT	1																																																																																																																												1
GAAGG	1																																																																																																																												1
GAATA	6																																																																																																																												6
GAATG	756	293	92	38	20	17	17	7	7		1																																																																																																																		1248
GAATT	8		1																																																																																																																										9
GACAG	2																																																																																																																												2
GAGAA	1																																																																																																																												1
GAGAG	2																																																																																																																												2
GAGGA		1																																																																																																																											1
GAGGG	1																																																																																																																												1
GAGTG	119	18	2	2																																																																																																																									141
GATAA	2																																																																																																																												2
GATAC	1	1																																																																																																																											2
GATAG		1																																																																																																																											1
GATAT	4																																																																																																																												4
GATCT	2																																																																																																																												2
GATTA	1																																																																																																																												1
GATTC	1	1																																																																																																																											2
GATTG	2			2																																																																																																																									4
GATTT	3																																																																																																																												3
GCAAT	3																																																																																																																												3
GCACT		1																																																																																																																											1
GCATG	1																																																																																																																												1
GCATT	1																																																																																																																												1
GCTAG	1																																																																																																																												1
GCTAT	1																																																																																																																												1
GCTCA	1																																																																																																																												1
GGAAA	7	1																																																																																																																											8
GGAAC	7	5	1		1																																																																																																																								14
GGAAT	636	281	130	64	25	15	17	13	6	2																																																																																																																			1189
GGACT	4																																																																																																																												4
GGAGA	2	1																																																																																																																											3
GGAGG	1	1																																																																																																																											2
GGAGT	88	15	1																																																																																																																										104
GGATA	1																																																																																																																												1
GGATC	1																																																																																																																												1
GGATG	1		1																																																																																																																										2
GGCGC	1																																																																																																																												1
GGGAC	1		1																																																																																																																										2
GGGGA	3																																																																																																																												3
GGTAA	1																																																																																																																												1
GGTAT	2																																																																																																																												2
GGTCA		2																																																																																																																											2
GGTTT	1																																																																																																																												1
GTAAC		1																																																																																																																											1
GTAAT	1							1																																																																																																																					2
GTATC	1																																																																																																																												1
GTATT	1																																																																																																																												1
GTGAA	1																																																																																																																												1
GTGAT	2																																																																																																																												2
GTGGA	70	6	3																																																																																																																										79
GTGTG	4	1																																																																																																																											5
GTTAC	1																																																																																																																												1
GTTAG	1																																																																																																																												1
GTTCC	4																																																																																																																												4
GTTGA	3																																																																																																																												3
GTTGT	1																																																																																																																												1
GTTTA	1																																																																																																																												1
GTTTT	11	2																																																																																																																											13
TAAAA	25	2																																																																																																																											27
TAAAG	1	1																																																																																																																											2
TAAAT	13																																																																																																																												13
TAACT	1																																																																																																																												1
TAAGG	1																																																																																																																												1
TAATA	6																																																																																																																												6
TAATC	1																																																																																																																												1
TAATG	4																																																																																																																												4
TAATT	28	1																																																																																																																											29
TACAA	1																																																																																																																												1
TACAG	2																																																																																																																												2
TACGA	1																																																																																																																												1
TACGT	1																																																																																																																												1
TACTA	1		1																																																																																																																										2
TACTT	1																																																																																																																												1
TAGAA	1	1																																																																																																																											2
TAGAG	2																																																																																																																												2
TAGAT		2	1																																																																																																																										3
TAGCA	1																																																																																																																												1
TAGTT	2																																																																																																																												2
TATAA	3	1																																																																																																																											4
TATAT	16	1																																																																																																																											17
TATCA	10	1	1																																																																																																																										12
TATCC	1																																																																																																																												1
TATCT	1																																																																																																																												1
TATGA	10			1																																																																																																																									11
TATGG		1																																																																																																																											1
TATTA	5	2		1	1																																																																																																																								9
TATTC	6	1																																																																																																																											7
TATTG	1																																																																																																																												1
TATTT	23																																																																																																																												23
TCAAA	6																																																																																																																												6
TCAAC	2	1																																																																																																																											3
TCAAT	3																																																																																																																												3
TCACA	1																																																																																																																												1
TCACG	1																																																																																																																												1
TCACT	4	1																																																																																																																											5
TCATA	3	1	1	1			1																																																																																																																						7
TCATC	1																																																																																																																												1
TCATG	1																																																																																																																												1
TCATT	16	2		1																																																																																																																									19
TCCAA	2																																																																																																																												2
TCCAC	256	41	1																																																																																																																										298
TCCAG	3																																																																																																																												3
TCCAT	757	283	70	13	7	7	10	2		1																																																																																																																			1150
TCCCC	1																																																																																																																												1
TCCCT		1																																																																																																																											1
TCCTC		1	1																																																																																																																										2
TCCTG	1																																																																																																																												1
TCCTT	1																																																																																																																												1
TCGAA	1																																																																																																																												1
TCGAT	1																																																																																																																												1
TCTAT	1																																																																																																																												1
TCTCC	1																																																																																																																												1
TCTCT	2																																																																																																																												2
TCTGA	4																																																																																																																												4
TCTGC	1																																																																																																																												1
TCTGT	1																																																																																																																												1
TCTTA	1																																																																																																																												1
TCTTC	3																																																																																																																												3
TCTTT	10	1																																																																																																																											11
TGAAA	40	4	2	1																																																																																																																									47
TGAAC	1																																																																																																																												1
TGAAG	5																																																																																																																												5
TGAAT	15	3																																																																																																																											18
TGACA	1																																																																																																																												1
TGACC	2																																																																																																																												2
TGAGC	1																																																																																																																												1
TGAGT	2																																																																																																																												2
TGATA	9	4																																																																																																																											13
TGATC	4	2		1																																																																																																																									7
TGATG	1																																																																																																																												1
TGATT	4																																																																																																																												4
TGCAA	2																																																																																																																												2
TGCAT	2	2																																																																																																																											4
TGCTC	1																																																																																																																												1
TGGAA	991	482	170	49	33	32	28	11	7	2	2																																																																																																																		1807
TGGAC	7	1	1																																																																																																																										9
TGGAG	330	57	2																																																																																																																										389
TGGAT	4				1																																																																																																																								5
TGGTA	1																																																																																																																												1
TGGTG	1																																																																																																																												1
TGGTT	1																																																																																																																												1
TGTAA	3	1																																																																																																																											4
TGTAG			1																																																																																																																										1
TGTAT	2																																																																																																																												2
TGTCA	1																																																																																																																												1
TGTGG	1																																																																																																																												1
TGTGT	5																																																																																																																												5
TGTTG								1																																																																																																																					1
TGTTT	10	1																																																																																																																											11
TTAAA	38	1																																																																																																																											39
TTAAC	1																																																																																																																												1
TTAAT	27	4																																																																																																																											31
TTACA	2																																																																																																																												2
TTACG	1																																																																																																																												1
TTACT	1																																																																																																																												1
TTAGC	1																																																																																																																												1
TTAGT	1																																																																																																																												1
TTATA	3																																																																																																																												3
TTATC	3																																																																																																																												3
TTATT	22	3																																																																																																																											25
TTCAA	5																																																																																																																												5
TTCAC	1																																																																																																																												1
TTCAG	1																																																																																																																												1
TTCAT	30	4	1	1																																																																																																																									36
TTCCA	631	301	109	42	22	19	16	8	5	1	1	1		1																																																																																																															1157
TTCCG	9	2																																																																																																																											11
TTCCT	9																																																																																																																												9
TTCGA	3																																																																																																																												3
TTCTA	4																																																																																																																												4
TTCTC	2																																																																																																																												2
TTCTG	1																																																																																																																												1
TTCTT	6																																																																																																																												6
TTGAA	4	1																																																																																																																											5
TTGAG	8																																																																																																																												8
TTGAT	1																																																																																																																												1
TTGCT	1																																																																																																																												1
TTGTA	3																																																																																																																												3
TTGTG	3																																																																																																																												3
TTGTT	9																																																																																																																												9
TTTAA	30	1																																																																																																																											31
TTTAC	1																																																																																																																												1
TTTAG	1																																																																																																																												1
TTTAT	22	3																																																																																																																											25
TTTCA	32	6	1	1																																																																																																																									40
TTTCC	7	1																																																																																																																											8
TTTCT	10	2																																																																																																																											12
TTTGA	2																																																																																																																												2
TTTGC	1																																																																																																																												1
TTTGT	17																																																																																																																												17
TTTTA	30	2																																																																																																																											32
TTTTC	39																																																																																																																												39
TTTTG	9	2	1																																																																																																																										12
AAAAAC	8	1																																																																																																																											9
AAAAAG	4																																																																																																																												4
AAAAAT	15	1																																																																																																																											16
AAAAGA	2																																																																																																																												2
AAAATA	3																																																																																																																												3
AAAATG	3	1	1											1																																																																																																															6
AAAATT	7																																																																																																																												7
AAACAA	4																																																																																																																												4
AAACGT	1																																																																																																																												1
AAAGAA	3																																																																																																																												3
AAAGAG	5	2																																																																																																																											7
AAAGAT	1																																																																																																																												1
AAATAA	3																																																																																																																												3
AAATAT	1																																																																																																																												1
AAATCC	1																																																																																																																												1
AAATGA	1					1																																																																																																																							2
AAATGG	1																																																																																																																												1
AAATTA	2																																																																																																																												2
AAATTG	1																																																																																																																												1
AAATTT	13																																																																																																																												13
AACAAA	3																																																																																																																												3
AACAAT	3																																																																																																																												3
AACAGC	1																																																																																																																												1
AACCAA	1																																																																																																																												1
AACCAC	1																																																																																																																												1
AACCCT	1																																																																																																																												1
AACGTG	1																																																																																																																												1
AACTCC	1																																																																																																																												1
AACTGC	1																																																																																																																												1
AACTTA	1																																																																																																																												1
AAGAAA	1																																																																																																																												1
AAGAGA	6	1																																																																																																																											7
AAGCCT	1	1	1																																																																																																																										3
AAGCTT	1																																																																																																																												1
AAGGAA	2																																																																																																																												2
AAGTGA	1																																																																																																																												1
AATAAA	6																																																																																																																												6
AATAAC	1	2																																																																																																																											3
AATACA	1																																																																																																																												1
AATAGT	4																																																																																																																												4
AATATA	1																																																																																																																												1
AATGAA	1																																																																																																																												1
AATGAT	4	1																																																																																																																											5
AATGCT	1																																																																																																																												1
AATGTG					1																																																																																																																								1
AATTAA	3																																																																																																																												3
AATTAT	1																																																																																																																												1
AATTCT	1																																																																																																																												1
AATTGA	2																																																																																																																												2
AATTTA	5																																																																																																																												5
AATTTC	8																																																																																																																												8
AATTTG	1																																																																																																																												1
AATTTT	9																																																																																																																												9
ACAAAA	1																																																																																																																												1
ACAAAC	1																																																																																																																												1
ACAACG	1																																																																																																																												1
ACAACT	1																																																																																																																												1
ACAATA	1	1																																																																																																																											2
ACACAG	1																																																																																																																												1
ACACAT	21	10	2	1																																																																																																																									34
ACAGAC	2																																																																																																																												2
ACAGCA	1																																																																																																																												1
ACAGGG	1																																																																																																																												1
ACATAC	17	8	1																																																																																																																										26
ACCACA	1																																																																																																																												1
ACCGTG	1																																																																																																																												1
ACGACA	1	1																																																																																																																											2
ACGTAC	1																																																																																																																												1
ACGTGA	1																																																																																																																												1
ACTACC		1																																																																																																																											1
ACTGAA	1																																																																																																																												1
ACTGAT	1																																																																																																																												1
ACTGCA	1																																																																																																																												1
ACTGCT	1																																																																																																																												1
AGAAAA	2																																																																																																																												2
AGAAAG	5	1																																																																																																																											6
AGACAC	1																																																																																																																												1
AGAGAA	8		1																																																																																																																										9
AGAGAT	1																																																																																																																												1
AGAGGA	1																																																																																																																												1
AGAGGG		1																																																																																																																											1
AGAGTA	1																																																																																																																												1
AGATAG	2																																																																																																																												2
AGATGA	3																																																																																																																												3
AGATTC	1																																																																																																																												1
AGCAAA	1																																																																																																																												1
AGCAAC	1																																																																																																																												1
AGCAAT	1																																																																																																																												1
AGCAGT	3																																																																																																																												3
AGCCTA			1		1																																																																																																																								2
AGCTGC	1																																																																																																																												1
AGGAAG	1																																																																																																																												1
AGGAGA	1																																																																																																																												1
AGGCTT	1																																																																																																																												1
AGGTGG	1																																																																																																																												1
AGTAAA	1																																																																																																																												1
AGTAAT	2																																																																																																																												2
AGTACC	1																																																																																																																												1
AGTATT	1																																																																																																																												1
AGTGAG	1																																																																																																																												1
AGTTCT	1																																																																																																																												1
ATAAAT	1																																																																																																																												1
ATAACA	1																																																																																																																												1
ATAATC	2																																																																																																																												2
ATAATG	12	1	1																																																																																																																										14
ATAATT	2																																																																																																																												2
ATACAC	9	3																																																																																																																											12
ATACAT	2			1																																																																																																																									3
ATACCA	1																																																																																																																												1
ATACTG	1																																																																																																																												1
ATAGTA	2																																																																																																																												2
ATATAA		1																																																																																																																											1
ATATAC											1																																																																																																																		1
ATATAG	1																																																																																																																												1
ATATTA	1																																																																																																																												1
ATATTT	2																																																																																																																												2
ATCACC	4																																																																																																																												4
ATCACT	3																																																																																																																												3
ATCATA	1																																																																																																																												1
ATCATT	16	4																																																																																																																											20
ATCTAT	1		1																																																																																																																										2
ATCTTC	1																																																																																																																												1
ATGATA	5	1	1																																																																																																																										7
ATGATT	1																																																																																																																												1
ATGGTG	2																																																																																																																												2
ATGTAT	2																																																																																																																												2
ATGTGT	5	2	1																																																																																																																										8
ATTAAA	2																																																																																																																												2
ATTACT	1																																																																																																																												1
ATTAGA	1																																																																																																																												1
ATTATA	5																																																																																																																												5
ATTATC	9																																																																																																																												9
ATTATG	2																																																																																																																												2
ATTCAA	2																																																																																																																												2
ATTGAA	1	1																																																																																																																											2
ATTGAT	1																																																																																																																												1
ATTGCT	1																																																																																																																												1
ATTGGT	1																																																																																																																												1
ATTGTC	1																																																																																																																												1
ATTGTT	3	1																																																																																																																											4
ATTTAA	2																																																																																																																												2
ATTTAT	1																																																																																																																												1
ATTTCA	3																																																																																																																												3
ATTTCC	3																																																																																																																												3
ATTTCT	1																																																																																																																												1
ATTTGA	1																																																																																																																												1
ATTTTA	3																																																																																																																												3
ATTTTC	1																																																																																																																												1
ATTTTG	1																																																																																																																												1
ATTTTT	11																																																																																																																												11
CAAAAA	1																																																																																																																												1
CAAACC		1																																																																																																																											1
CAAATC	2																																																																																																																												2
CAAATG		1																																																																																																																											1
CAAATT	2																																																																																																																												2
CAACAG	3																																																																																																																												3
CAACAT	2																																																																																																																												2
CAACTA		1																																																																																																																											1
CAAGAA	1																																																																																																																												1
CAATAA	4																																																																																																																												4
CAATAG	1																																																																																																																												1
CAATCG	1																																																																																																																												1
CAATGA	1	1																																																																																																																											2
CACAAC	1																																																																																																																												1
CACACC		1																																																																																																																											1
CACATA	5																																																																																																																												5
CACCAT	2	1																																																																																																																											3
CACCCT	1																																																																																																																												1
CACGCA	1																																																																																																																												1
CACTAT	1																																																																																																																												1
CAGAAT	1																																																																																																																												1
CAGCAA	2																																																																																																																												2
CAGTAG	1	1																																																																																																																											2
CAGTTA	1																																																																																																																												1
CATACA	5	1																																																																																																																											6
CATATA	2																																																																																																																												2
CATCAA	1																																																																																																																												1
CATCAC	6	1																																																																																																																											7
CATTAC	1																																																																																																																												1
CATTAT	3																																																																																																																												3
CATTGC	1																																																																																																																												1
CATTTC	1																																																																																																																												1
CATTTT	1																																																																																																																												1
CCACAG	1																																																																																																																												1
CCACCT	1																																																																																																																												1
CCATAA	1																																																																																																																												1
CCATCA	1																																																																																																																												1
CCCCCA	1																																																																																																																												1
CCCTGT	1																																																																																																																												1
CCGCTT	1																																																																																																																												1
CCTAAG		4																																																																																																																											4
CCTCCA	1																																																																																																																												1
CCTCTT	1																																																																																																																												1
CCTTTC	1																																																																																																																												1
CCTTTT	1																																																																																																																												1
CGTTGT	1																																																																																																																												1
CTAAGC			1		1																																																																																																																								2
CTACTG	3																																																																																																																												3
CTACTT	1																																																																																																																												1
CTAGCA	1																																																																																																																												1
CTATCA	1																																																																																																																												1
CTATTA			1																																																																																																																										1
CTCCCT	1																																																																																																																												1
CTCTCA	1		1																																																																																																																										2
CTCTTC	4	1																																																																																																																											5
CTCTTT	4																																																																																																																												4
CTGAAT	1																																																																																																																												1
CTGATG	1																																																																																																																												1
CTGGGG	1																																																																																																																												1
CTGTGT	2																																																																																																																												2
CTGTTG	1																																																																																																																												1
CTTCCT	1																																																																																																																												1
CTTTCT	1																																																																																																																												1
CTTTTT	5																																																																																																																												5
GAAAAA	2																																																																																																																												2
GAAAAT	2			1	1	1																																																																																																																							5
GAAAGA	3	1																																																																																																																											4
GAAATG	2																																																																																																																												2
GAAATT	4																																																																																																																												4
GAAGCT		1																																																																																																																											1
GAATCT	1																																																																																																																												1
GAATGT					1																																																																																																																								1
GAATTA	1																																																																																																																												1
GAATTT	1																																																																																																																												1
GACAAC	1	1																																																																																																																											2
GACGAG	1																																																																																																																												1
GAGAAA	2	1																																																																																																																											3
GAGAGG	2	1																																																																																																																											3
GAGGAA	1																																																																																																																												1
GAGGAT	1																																																																																																																												1
GAGGGG	1																																																																																																																												1
GATAAA	1																																																																																																																												1
GATAAG		1																																																																																																																											1
GATAAT	4																																																																																																																												4
GATACA	1																																																																																																																												1
GATGAC	1																																																																																																																												1
GCAAGT		1																																																																																																																											1
GCACCA	2																																																																																																																												2
GCAGGT	1																																																																																																																												1
GCCTAA		1																																																																																																																											1
GCTACA	1																																																																																																																												1
GCTGCA	3																																																																																																																												3
GCTGCC	1																																																																																																																												1
GCTTAG	1																																																																																																																												1
GGAAGA	1																																																																																																																												1
GGACAA	1																																																																																																																												1
GGCTTA		1		1	2		2																																																																																																																						6
GGTGAT	1																																																																																																																												1
GGTGGC	1																																																																																																																												1
GTAAAA	1																																																																																																																												1
GTAATA	3																																																																																																																												3
GTAATG	1																																																																																																																												1
GTACAG	1																																																																																																																												1
GTAGCA	2																																																																																																																												2
GTATAT	1																																																																																																																												1
GTATCA		1																																																																																																																											1
GTATGT	1	1																																																																																																																											2
GTCATC	1	1																																																																																																																											2
GTGATG	7	1																																																																																																																											8
GTGGTA		1																																																																																																																											1
GTGTAT	6	2																																																																																																																											8
GTGTGC	1																																																																																																																												1
GTTACT	1																																																																																																																												1
GTTGAA	1																																																																																																																												1
GTTGAG			1																																																																																																																										1
GTTGGA	1																																																																																																																												1
GTTGTC	1																																																																																																																												1
GTTGTG	1																																																																																																																												1
GTTTGA	1																																																																																																																												1
GTTTTT	2	1																																																																																																																											3
TAAAAA	12	2																																																																																																																											14
TAAAAT	4																																																																																																																												4
TAAAGA	1																																																																																																																												1
TAAATA	2																																																																																																																												2
TAAATC	1																																																																																																																												1
TAAATG	2																																																																																																																												2
TAAATT	1	1																																																																																																																											2
TAACAA	1																																																																																																																												1
TAATAG	3	1	1																																																																																																																										5
TAATGA	2																																																																																																																												2
TAATGG	1																																																																																																																												1
TAATGT	1																																																																																																																												1
TAATTA	1																																																																																																																												1
TAATTG	1																																																																																																																												1
TAATTT	4																																																																																																																												4
TACACA	6																																																																																																																												6
TACATA	2																																																																																																																												2
TACTAA	1																																																																																																																												1
TACTAT	3	1																																																																																																																											4
TACTCC		1																																																																																																																											1
TAGAAA	1																																																																																																																												1
TAGAGG		1																																																																																																																											1
TAGATC	1																																																																																																																												1
TAGGCT	1																																																																																																																												1
TAGTAA	2																																																																																																																												2
TAGTAT	1		1																																																																																																																										2
TAGTGA	1																																																																																																																												1
TATAAA	1																																																																																																																												1
TATAAT	2																																																																																																																												2
TATACA			1																																																																																																																										1
TATATC	1																																																																																																																												1
TATATG	2		1																	1																																																																																																									4
TATATT	1	1																																																																																																																											2
TATCAT	7		1																																																																																																																										8
TATCCG	1																																																																																																																												1
TATGAG	1																																																																																																																												1
TATGCA	1																																																																																																																												1
TATGTA	4	1																																																																																																																											5
TATGTG	9	4																																																																																																																											13
TATTAC	6																																																																																																																												6
TATTAG	1																																																																																																																												1
TATTGA	1																																																																																																																												1
TATTGC	1																																																																																																																												1
TATTGT	1																																																																																																																												1
TATTTA	1																																																																																																																												1
TATTTT	6																																																																																																																												6
TCAAAA	1																																																																																																																												1
TCAATG	1																																																																																																																												1
TCACCA	1																																																																																																																												1
TCATCT	1																																																																																																																												1
TCATTA	4																																																																																																																												4
TCATTG	2																																																																																																																												2
TCCCCC	1																																																																																																																												1
TCCTCA	1																																																																																																																												1
TCGTCA	1																																																																																																																												1
TCGTGA	1																																																																																																																												1
TCTCCT	1																																																																																																																												1
TCTCTA		1																																																																																																																											1
TCTCTG	2																																																																																																																												2
TCTCTT	4	3																																																																																																																											7
TCTGTA	1																																																																																																																												1
TCTGTG	2																																																																																																																												2
TCTGTT	1																																																																																																																												1
TCTTAT	1																																																																																																																												1
TCTTCA	1																																																																																																																												1
TCTTCC	1																																																																																																																												1
TCTTTC	4	1																																																																																																																											5
TCTTTT	1																																																																																																																												1
TGAAAA	1																																																																																																																												1
TGAAAC	1																																																																																																																												1
TGAAAG		1																																																																																																																											1
TGAAAT	3	1																																																																																																																											4
TGAACG	1																																																																																																																												1
TGAACT	1																																																																																																																												1
TGACGG	1																																																																																																																												1
TGATAA	7	2																																																																																																																											9
TGATCG	1																																																																																																																												1
TGATCT		1																																																																																																																											1
TGATGG	10																																																																																																																												10
TGATTT	1																																																																																																																												1
TGCAAA		1																																																																																																																											1
TGCACT	1																																																																																																																												1
TGCAGC	1																																																																																																																												1
TGCGTG	1																																																																																																																												1
TGCGTT			1																																																																																																																										1
TGCTAG	1																																																																																																																												1
TGCTGT		1																																																																																																																											1
TGCTTA	1																																																																																																																												1
TGGAAA	2																																																																																																																												2
TGGAAC	1																																																																																																																												1
TGGTGA	9																																																																																																																												9
TGGTGT	2	1																																																																																																																											3
TGTAGT	1																																																																																																																												1
TGTATG	13	4																																																																																																																											17
TGTCCG	1																																																																																																																												1
TGTCGT	1																																																																																																																												1
TGTCTC	2																																																																																																																												2
TGTCTG	2	1																																																																																																																											3
TGTGTA	40	10																																																																																																																											50
TGTGTC	4	1																																																																																																																											5
TGTGTT	1	1																																																																																																																											2
TGTTAA	2																																																																																																																												2
TGTTAT	1																																																																																																																												1
TGTTGA	1																																																																																																																												1
TGTTGC	2																																																																																																																												2
TGTTGG	2																																																																																																																												2
TGTTTT	2																																																																																																																												2
TTAAAA	7																																																																																																																												7
TTAAAC	1																																																																																																																												1
TTAAAT	2	1																																																																																																																											3
TTAATA	1																																																																																																																												1
TTAATT	1																																																																																																																												1
TTACTA	1																																																																																																																												1
TTATAA	1																																																																																																																												1
TTATCA	4																																																																																																																												4
TTATCG	1																																																																																																																												1
TTATTC	2																																																																																																																												2
TTATTG	8																																																																																																																												8
TTATTT	3																																																																																																																												3
TTCAAA	2																																																																																																																												2
TTCAAT	2																																																																																																																												2
TTCATT	3																																																																																																																												3
TTCCTT	1																																																																																																																												1
TTCGTT	1																																																																																																																												1
TTCTCT	3																																																																																																																												3
TTCTGC	1																																																																																																																												1
TTCTGT	1																																																																																																																												1
TTCTTT	1																																																																																																																												1
TTGAAA	1																																																																																																																												1
TTGAAC	1																																																																																																																												1
TTGAAT	1																																																																																																																												1
TTGCTG	1																																																																																																																												1
TTGGAA	1																																																																																																																												1
TTGTAT	2																																																																																																																												2
TTGTCG	4																																																																																																																												4
TTGTGA			1																																																																																																																										1
TTGTTA	5																																																																																																																												5
TTGTTT	4	1																																																																																																																											5
TTTAAA	10	1																																																																																																																											11
TTTAAT	1																																																																																																																												1
TTTATA	1		1																																																																																																																										2
TTTATT	4																																																																																																																												4
TTTCAA	2																																																																																																																												2
TTTCAG	1																																																																																																																												1
TTTCAT	1																																																																																																																												1
TTTCCT	1																																																																																																																												1
TTTCTC	3																																																																																																																												3
TTTCTT	1																																																																																																																												1
TTTGCT	2																																																																																																																												2
TTTGTA	1																																																																																																																												1
TTTGTT	3																																																																																																																												3
TTTTAA	8																																																																																																																												8
TTTTAC	1																																																																																																																												1
TTTTAT	1																																																																																																																												1
TTTTCA	2																																																																																																																												2
TTTTCC	1																																																																																																																												1
TTTTCT	1	1																																																																																																																											2
TTTTGT	2																																																																																																																												2
TTTTTA	7																																																																																																																												7
TTTTTC	6																																																																																																																												6
TTTTTG	5	1																																																																																																																											6

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	843	639	551	429	370	304	230	195	148	119	110	88	73	68	48	36	31	30	28	26	22	12	19	5	13	8	11	12	3	1	7	3	1	2		5	2	1	1		1	1	1	2		2			2		1			3			1	1						1														1																										1	1	1	1	4515
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	7	6	6	4	3	2	3	2	2	5	1	1	2	4	2	6	2	2	1			3		1	1			2	2	1	2	2		2	2		2	1			1		1	1	1			1	1			1	3		2	3			1		1						1	2						1	1		1	1							1																1			1		1	1	111
AC/GT	-	-	-	891	472	357	259	190	143	96	78	68	55	44	35	30	27	28	24	17	19	11	10	14	5	4	13	13	6	5	3	4	2	3	1	7	3	2	5	2	3	3		1	4	4		1	3	1	3	1			1	1			3	1	3	1																																																															2980
AG/CT	-	-	-	596	400	336	263	191	103	54	45	29	18	8	10	10	2	3	1	2	2	1	1	1		2													1				1																																																																																		2080
AT/AT	-	-	-	803	561	386	292	198	158	81	50	32	18	11	18	9	5	3	3	1	1	1	1																																																																																																						2632
CG/CG	-	-	-	2	2																																																																																																																								4
AAC/GTT	-	-	218	110	63	31	27	11	6	3	3	1	6	3	4			1		2	3								1	1																																																																																															494
AAG/CTT	-	-	78	30	14	12					1							1					1																																																																																																						137
AAT/ATT	-	-	883	412	187	97	79	48	34	29	29	35	34	35	27	28	20	21	30	25	22	24	19	18	19	19	8	10	10	6	4	9	2	3	3	6	5	3	11	11				1																																																																																	2266
ACC/GGT	-	-	155	62	33	23	7	4		1					1			1																																																																																																											287
ACG/CGT	-	-	6	3	2																																																																																																																								11
ACT/AGT	-	-	160	101	56	23	32	13	10	8	6	4	4	4		1		2	2		2	1		3					2						1			2		3	1																																																																																				441
AGC/CTG	-	-	64	31	19	8	1		2	1	1																																																																																																																		127
AGG/CCT	-	-	50	23	15	4	4	1	5	2		1																																																																																																																	105
ATC/ATG	-	-	404	194	130	80	39	31	16	12	11	10	5	11	6	3	5	3	1	2	5	1	1	3	1	3			1	1	1						1			1	1																																																																																				983
AAAC/GTTT	-	91	19	5	3	1	1																																																																																																																						120
AAAG/CTTT	-	109	16	10	5	1					1			1									1																																																																																																						144
AAAT/ATTT	-	218	34	2																																																																																																																									254
AACC/GGTT	-	5	2	3	2	2	1		1																																																																																																																				16
AACG/CGTT	-		2	1																																																																																																																									3
AACT/AGTT	-	7	2																																																																																																																										9
AAGC/CTTG	-	7	1																																																																																																																										8
AAGG/CCTT	-	29	9	4	1	1	1	2			1																																																																																																																		48
AAGT/ACTT	-	11	2																																																																																																																										13
AATC/ATTG	-	83	15	8	2	1																																																																																																																							109
AATG/ATTC	-	163	69	19	10	4	2	1			1			1	1																																																																																																														271
AATT/AATT	-	220	30																																																																																																																										250
ACAG/CTGT	-	34	8	9		1																																																																																																																							52
ACAT/ATGT	-	149	55	31	11	3	4	2	2	5	4	1	1	1	1		1												1	1																																																																																															273
ACCC/GGGT	-	23	5	1	1																																																																																																																								30
ACCT/AGGT	-	5	3	2		1																																																																																																																							11
ACGC/CGTG	-	2		1																																																																																																																									3
ACGG/CCGT	-	3	1																																																																																																																										4
ACGT/ACGT	-	2	1																																																																																																																										3
ACTC/AGTG	-	11	2		1							1																																																																																																																	15
ACTG/AGTC	-	6	1	3	1		1		1																																																																																																																				13
AGAT/ATCT	-	45	21	7	7		6	3	3	2	1																																																																																																																		95
AGCC/CTGG	-		1																																																																																																																										1
AGCT/AGCT	-	2																																																																																																																											2
AGGG/CCCT	-	9	1																																																																																																																										10
ATCC/ATGG	-	141	61	31	8	5	6	7	3	3	1						1																																																																																																												267
ATCG/ATCG	-	5	1																																																																																																																										6
ATGC/ATGC	-	8	2																																																																																																																										10
AAAAC/GTTTT	105	10	1																																																																																																																										116
AAAAG/CTTTT	143	9		1																																																																																																																									153
AAAAT/ATTTT	304	26	1																																																																																																																										331
AAACC/GGTTT	3	1			1																																																																																																																								5
AAACG/CGTTT	1			1																																																																																																																									2
AAACT/AGTTT	9																																																																																																																												9
AAAGC/CTTTG	4																																																																																																																												4
AAAGG/CCTTT	38	4																																																																																																																											42
AAAGT/ACTTT	12	3																																																																																																																											15
AAATC/ATTTG	32	2																																																																																																																											34
AAATG/ATTTC	290	35	7	6	1	2																																																																																																																							341
AAATT/AATTT	327	19		1																																																																																																																									347
AACAC/GTGTT	10							1																																																																																																																					11
AACAG/CTGTT	4																																																																																																																												4
AACAT/ATGTT	3																																																																																																																												3
AACCT/AGGTT	1																																																																																																																												1
AACGG/CCGTT	32	13	6		1																																																																																																																								52
AACGT/ACGTT	5	1																																																																																																																											6
AACTC/AGTTG	19	3																																																																																																																											22
AACTG/AGTTC	4																																																																																																																												4
AACTT/AAGTT	5																																																																																																																												5
AAGAC/CTTGT	1																																																																																																																												1
AAGAG/CTCTT	20	1																																																																																																																											21
AAGAT/ATCTT	14	1																																																																																																																											15
AAGCT/AGCTT	2	1																																																																																																																											3
AAGGC/CCTTG		1																																																																																																																											1
AAGGG/CCCTT	6	1																																																																																																																											7
AAGGT/ACCTT	4																																																																																																																												4
AAGTG/ACTTC	17	2																																																																																																																											19
AATAC/ATTGT	12																																																																																																																												12
AATAG/ATTCT	33	3	1																																																																																																																										37
AATAT/ATATT	70	7	1	1	2	1																																																																																																																							82
AATCC/ATTGG	14			2	2																																																																																																																								18
AATCG/ATTCG	13	1																																																																																																																											14
AATCT/AGATT	8	4	1	1		1																																																																																																																							15
AATGC/ATTGC	20	3																																																																																																																											23
AATGG/ATTCC	6536	2867	1117	463	232	222	181	101	61	23	8	5		1	1	1																																																																																																													11819
AATGT/ACATT	35	3	2	1	1	1	1	1																																																																																																																					45
AATTC/AATTG	77	9	2																																																																																																																										88
ACACC/GGTGT	6	1																																																																																																																											7
ACACG/CGTGT	1																																																																																																																												1
ACACT/AGTGT	2		1																																																																																																																										3
ACAGC/CTGTG	1																																																																																																																												1
ACAGG/CCTGT	4																																																																																																																												4
ACAGT/ACTGT	3																																																																																																																												3
ACATC/ATGTG	7	1																																																																																																																											8
ACATG/ATGTC	6																																																																																																																												6
ACCAT/ATGGT	7	1					1	1																																																																																																																					10
ACCCC/GGGGT	2																																																																																																																												2
ACCCT/AGGGT			1																																																																																																																										1
ACCTG/AGGTC	2	2																																																																																																																											4
ACGAT/ATCGT	4	1	1																																																																																																																										6
ACGGG/CCCGT	2		1																																																																																																																										3
ACGTC/ACGTG	1	1																																																																																																																											2
ACTAT/AGTAT	2		1																																																																																																																										3
ACTCC/AGTGG	1243	194	9	3																																																																																																																									1449
ACTCG/AGTCG	1																																																																																																																												1
ACTCT/AGAGT	4																																																																																																																												4
ACTGC/AGTGC		1																																																																																																																											1
ACTGG/AGTCC	23	3	1																																																																																																																										27
AGAGC/CTCTG	2																																																																																																																												2
AGAGG/CCTCT	7	4	1																																																																																																																										12
AGATC/ATCTG	23	2		1																																																																																																																									26
AGATG/ATCTC	3		1																																																																																																																										4
AGCAT/ATGCT	2																																																																																																																												2
AGCCT/AGGCT	1																																																																																																																												1
AGCTC/AGCTG	5	1	1																																																																																																																										7
AGGAT/ATCCT	4	1																																																																																																																											5
AGGGG/CCCCT	12	1																																																																																																																											13
ATATC/ATATG	69	10	5	2			1																																																																																																																						87
ATCCC/ATGGG	5		1																																																																																																																										6
ATCCG/ATCGG	3																																																																																																																												3
ATCGC/ATGCG	1																																																																																																																												1
ATGCC/ATGGC	1			1																																																																																																																									2
CCCCG/CGGGG	1																																																																																																																												1
CCGCG/CGCGG	1																																																																																																																												1
AAAAAC/GTTTTT	35	4																																																																																																																											39
AAAAAG/CTTTTT	29	1																																																																																																																											30
AAAAAT/ATTTTT	71	3																																																																																																																											74
AAAACC/GGTTTT	1																																																																																																																												1
AAAACG/CGTTTT	1																																																																																																																												1
AAAAGC/CTTTTG	3																																																																																																																												3
AAAAGG/CCTTTT	6																																																																																																																												6
AAAAGT/ACTTTT	3																																																																																																																												3
AAAATC/ATTTTG	3																																																																																																																												3
AAAATG/ATTTTC	16	1	1	1	1	2								1																																																																																																															23
AAAATT/AATTTT	51																																																																																																																												51
AAACAC/GTGTTT	2	1																																																																																																																											3
AAACAG/CTGTTT	2																																																																																																																												2
AAACCC/GGGTTT		1																																																																																																																											1
AAACGC/CGTTTG			1																																																																																																																										1
AAACGT/ACGTTT	1																																																																																																																												1
AAACTC/AGTTTG	1																																																																																																																												1
AAACTG/AGTTTC	3																																																																																																																												3
AAACTT/AAGTTT	2																																																																																																																												2
AAAGAG/CTCTTT	48	10	1																																																																																																																										59
AAAGAT/ATCTTT	3																																																																																																																												3
AAAGGG/CCCTTT	1																																																																																																																												1
AAAGTG/ACTTTC	1	1																																																																																																																											2
AAATAC/ATTTGT	4																																																																																																																												4
AAATAG/ATTTCT	2																																																																																																																												2
AAATAT/ATATTT	12	2	1																																																																																																																										15
AAATCC/ATTTGG	3																																																																																																																												3
AAATCT/AGATTT	1																																																																																																																												1
AAATGC/ATTTGC		2																																																																																																																											2
AAATGG/ATTTCC	9																																																																																																																												9
AAATGT/ACATTT	2																																																																																																																												2
AAATTC/AATTTG	10																																																																																																																												10
AAATTG/AATTTC	27	2																																																																																																																											29
AAATTT/AAATTT	33	3																																																																																																																											36
AACAAG/CTTGTT	1																																																																																																																												1
AACAAT/ATTGTT	29	4																																																																																																																											33
AACACC/GGTGTT	4	1																																																																																																																											5
AACAGC/CTGTTG	12	1																																																																																																																											13
AACAGT/ACTGTT	1																																																																																																																												1
AACATC/ATGTTG	4																																																																																																																												4
AACATT/AATGTT	3																																																																																																																												3
AACCAC/GGTTGT	4																																																																																																																												4
AACCAT/ATGGTT	1																																																																																																																												1
AACCCT/AGGGTT	1																																																																																																																												1
AACCTC/AGGTTG			1																																																																																																																										1
AACGAC/CGTTGT	10	2																																																																																																																											12
AACGAT/ATCGTT	1																																																																																																																												1
AACGTG/ACGTTC	3																																																																																																																												3
AACTAC/AGTTGT	2	1																																																																																																																											3
AACTAG/AGTTCT	1																																																																																																																												1
AACTCC/AGTTGG	2																																																																																																																												2
AACTGC/AGTTGC	2																																																																																																																												2
AACTGG/AGTTCC	1																																																																																																																												1
AACTGT/ACAGTT	1																																																																																																																												1
AACTTC/AAGTTG	1																																																																																																																												1
AACTTG/AAGTTC	2																																																																																																																												2
AAGAAT/ATTCTT	3																																																																																																																												3
AAGAGG/CCTCTT	11	1																																																																																																																											12
AAGAGT/ACTCTT	1																																																																																																																												1
AAGATC/ATCTTG		1																																																																																																																											1
AAGATG/ATCTTC	6																																																																																																																												6
AAGCAG/CTGCTT	1																																																																																																																												1
AAGCAT/ATGCTT	1																																																																																																																												1
AAGCCT/AGGCTT	4	7	3	1	4		2																																																																																																																						21
AAGCGG/CCGCTT	1																																																																																																																												1
AAGCTG/AGCTTC		1																																																																																																																											1
AAGCTT/AAGCTT	1																																																																																																																												1
AAGGAC/CCTTGT	1																																																																																																																												1
AAGGAG/CCTTCT	2																																																																																																																												2
AAGGAT/ATCCTT		1																																																																																																																											1
AAGTAG/ACTTCT	1																																																																																																																												1
AAGTGC/ACTTGC	1	1																																																																																																																											2
AATACC/ATTGGT	2																																																																																																																												2
AATACT/AGTATT	4		1																																																																																																																										5
AATAGC/ATTGCT	4																																																																																																																												4
AATAGT/ACTATT	27	2	2																																																																																																																										31
AATATC/ATATTG	2																																																																																																																												2
AATATT/AATATT	2																																																																																																																												2
AATCAC/ATTGTG			1																																																																																																																										1
AATCAG/ATTCTG	1																																																																																																																												1
AATCAT/ATGATT	6																																																																																																																												6
AATCGC/ATTGCG	1																																																																																																																												1
AATCTG/AGATTC	3																																																																																																																												3
AATGAC/ATTGTC	4	1																																																																																																																											5
AATGAT/ATCATT	77	9	3																																																																																																																										89
AATGCT/AGCATT	1																																																																																																																												1
AATGGC/ATTGCC	1																																																																																																																												1
AATGGT/ACCATT	3																																																																																																																												3
AATGTC/ACATTG	1																																																																																																																												1
AATGTG/ACATTC					2																																																																																																																								2
AATTAC/AATTGT	1																																																																																																																												1
AATTAG/AATTCT	3																																																																																																																												3
AATTAT/AATTAT	12																																																																																																																												12
AATTCC/AATTGG	1																																																																																																																												1
ACACAG/CTGTGT	14	2																																																																																																																											16
ACACAT/ATGTGT	137	45	4	1																																																																																																																									187
ACACCC/GGGTGT		1																																																																																																																											1
ACACGC/CGTGTG	3																																																																																																																												3
ACACGG/CCGTGT	1																																																																																																																												1
ACACGT/ACGTGT	1																																																																																																																												1
ACAGAG/CTCTGT	4																																																																																																																												4
ACAGAT/ATCTGT	2																																																																																																																												2
ACAGCC/CTGTGG	1																																																																																																																												1
ACAGCT/AGCTGT	1																																																																																																																												1
ACAGGG/CCCTGT	2																																																																																																																												2
ACAGGT/ACCTGT	1																																																																																																																												1
ACATAT/ATATGT	15	1	2	1							1									1																																																																																																									21
ACCACT/AGTGGT		2																																																																																																																											2
ACCAGC/CTGGTG	2																																																																																																																												2
ACCAGT/ACTGGT	1																																																																																																																												1
ACCATC/ATGGTG	43	3																																																																																																																											46
ACCCCC/GGGGGT	1																																																																																																																												1
ACCCTC/AGGGTG	1																																																																																																																												1
ACCGCC/CGGTGG	1																																																																																																																												1
ACCGTC/ACGGTG	1																																																																																																																												1
ACCGTG/ACGGTC	1																																																																																																																												1
ACCTCC/AGGTGG	3																																																																																																																												3
ACCTCT/AGAGGT		1																																																																																																																											1
ACCTGC/AGGTGC	1																																																																																																																												1
ACGAGG/CCTCGT	1																																																																																																																												1
ACGATC/ATCGTG	2																																																																																																																												2
ACGATG/ATCGTC	3	1																																																																																																																											4
ACGGAT/ATCCGT	1																																																																																																																												1
ACTAGC/AGTGCT	2																																																																																																																												2
ACTATC/AGTGAT	6																																																																																																																												6
ACTCAT/AGTATG	1																																																																																																																												1
ACTCCT/AGGAGT		1																																																																																																																											1
ACTCTC/AGAGTG	2		1																																																																																																																										3
ACTGAT/AGTATC	2	1																																																																																																																											3
ACTGCT/AGCAGT	10	1																																																																																																																											11
AGAGAT/ATCTCT	3	1																																																																																																																											4
AGAGGG/CCCTCT	3	2																																																																																																																											5
AGATAT/ATATCT	3		1																																																																																																																										4
AGATCT/AGATCT	1																																																																																																																												1
AGCATC/ATGCTG	1																																																																																																																												1
AGCCCC/CTGGGG	1																																																																																																																												1
AGCGGC/CCGCTG	1																																																																																																																												1
AGCTGC/AGCTGC	5																																																																																																																												5
AGGATG/ATCCTC	2																																																																																																																												2
AGGGGG/CCCCCT	2																																																																																																																												2
ATATGC/ATATGC	1																																																																																																																												1
