Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-76/megassr/results/hub_GCA_947044205.1/fasta/hub_GCA_947044205.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              133
Total size of examined sequences (bp):           4065644
Total number of identified SSRs:                 22
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	2										2
GC	-	-	-	3			1							4
CCG	-	-	2											2
CGG	-	-	1											1
GCA	-	-											1	1
GCG	-	-	1											1
GCT	-	-	1											1
GGC	-	-		1										1
CGCGC	1													1
GCGCA	1													1
GCGCG	1													1
CGACTT	1													1
CGCCAG	1													1
CGGCAA	1													1
CTGGCA									1					1
GCTGGC	1													1
TGGTCG		1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	5			1							6
AGC/CTG	-	-	1										1	2
CCG/CGG	-	-	4	1										5
AGCGC/CGCTG	1													1
CCGCG/CGCGG	2													2
AACGGC/CCGTTG	1													1
AAGTCG/ACTTCG	1													1
ACCACG/CGTGGT		1												1
ACTGGC/AGTGCC									1					1
AGCGCC/CGCTGG	2													2
