Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_937900865.1/fasta/hub_GCA_937900865.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4759
Total size of examined sequences (bp):           6572805
Total number of identified SSRs:                 3923
Number of SSR containing sequences:              2332
Number of sequences containing more than 1 SSR:  981
Number of SSRs present in compound formation:    445


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	11
2	1026
3	1025
4	344
5	767
6	750

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			2	1		1	1		1	6
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1									1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1		1		1			4
AC	-	-	-	44	34	24	19	10	10	6	5	4	1		1						1						159
AG	-	-	-	10	27	26	16	1																			80
AT	-	-	-	2	3	2	4		1	1																	13
CA	-	-	-	39	26	26	19	20	20	5	9	3	1	2	2	1					1	1					175
CG	-	-	-	11	9	2	1																				23
CT	-	-	-	15	24	15	24	2	3																		83
GA	-	-	-	11	21	14	18	8	1																		73
GC	-	-	-	6	2	1																					9
GT	-	-	-	60	32	31	26	20	13	10	3	2	2		1	3					2						205
TA	-	-	-	3	2	3		1	2																		11
TC	-	-	-	19	25	13	4	3																			64
TG	-	-	-	30	20	16	26	13	9	5	5	1	3	2			1										131
AAC	-	-	5	6	1	2																					14
AAG	-	-	19	5	5	1	1																				31
AAT	-	-	10	7	4	2	1		1					1	1												27
ACA	-	-	4	8	1	1	1									1											16
ACC	-	-	4	4	1	1	1																				11
ACG	-	-	4	2		1																					7
ACT	-	-			1																						1
AGA	-	-	19	7	5		1																				32
AGC	-	-	10	3	4	2																					19
AGG	-	-	2	1																							3
ATA	-	-	3	1	1	1	1		1																		8
ATC	-	-	1	2	1																						4
ATG	-	-	1	2																							3
ATT	-	-	6	2	2		1	1	2																		14
CAA	-	-	13	3	1	3																					20
CAC	-	-	8	2	4		2																				16
CAG	-	-	16	4	5	1	1																				27
CAT	-	-	5	1	1																						7
CCA	-	-	9	8	2	1																					20
CCG	-	-	13	3	1		1																				18
CCT	-	-	8	6	2																						16
CGA	-	-	15	3	4			1																			23
CGC	-	-	12	1	4	1																					18
CGG	-	-	6	1	1		1																				9
CGT	-	-	9	4	1																						14
CTA	-	-	1																								1
CTC	-	-	7	4	2	1																					14
CTG	-	-	6	3	2	3	1			1																	16
CTT	-	-	42	16	7	3																					68
GAA	-	-	34	10	7	1			1																		53
GAC	-	-	11	2	2	2	1																				18
GAG	-	-	14	9	2	1																					26
GAT	-	-	6	3	1																						10
GCA	-	-	11	5	3	2	1																				22
GCC	-	-	21	1	3		1																				26
GCG	-	-	7	3	1	1		1																			13
GCT	-	-	7	8	1		2		2			1															21
GGA	-	-	2	4	4	1																					11
GGC	-	-	12	7	1	1																					21
GGT	-	-	4	4	1																						9
GTA	-	-	1						1																		2
GTC	-	-	11	4	1	2																					18
GTG	-	-	9	4	1	2																					16
GTT	-	-	8	4	2	1	1	1																			17
TAA	-	-	5	1		1	1	1																			9
TAC	-	-	1																								1
TAT	-	-	2	5	5	2		1			1																16
TCA	-	-	8	3	3	1																					15
TCC	-	-	7	5	1	3	1																				17
TCG	-	-	16	7	1	2		1																			27
TCT	-	-	19	12	7	2																					40
TGA	-	-	6	2	1																						9
TGC	-	-	12	4	7	1	1		1		1																27
TGG	-	-	13	6	4	1																					24
TGT	-	-	10	5	3	2																					20
TTA	-	-	10	5				1	1	1					1												19
TTC	-	-	14	6	5	1																					26
TTG	-	-	6	5	2	1					1																15
AAAC	-		2	3																							5
AAAG	-	4	1																								5
AAAT	-	13	9	1																							23
AACA	-	1			1																						2
AACT	-	1																									1
AAGA	-						1																				1
AATA	-	10	7	3				1			1																22
AATC	-	1																									1
AATG	-	2																									2
AATT	-	1																									1
ACAG	-			1																							1
ACCA	-	1	2				1																				4
ACCG	-	1																									1
ACGA	-	1	1																								2
ACGC	-	4	2	1																							7
ACGT	-	1																									1
AGAT	-		1																								1
AGCA	-	3																									3
AGCC	-	1																									1
AGGC	-	1																									1
ATAA	-	5	2	1																							8
ATAG	-	1																									1
ATCT	-	1																									1
ATGG	-	1																									1
ATTA	-	1																									1
ATTT	-	7	2	1																							10
CAAA	-	1																									1
CAAC	-	2																									2
CAAG	-	1																									1
CACC	-	2	1																								3
CACG	-	13	4	1	1	1					2																22
CAGT	-	1																									1
CATT	-	2																									2
CCAA	-	1																									1
CCAC	-	2																									2
CCAG	-	1																									1
CCAT	-	1																									1
CCGG	-	1																									1
CGAA	-	1																									1
CGAG	-	1																									1
CGCA	-	12	6	2			1																				21
CGCC	-	1																									1
CGGG	-	3																									3
CGTA	-	1																									1
CGTG	-	6	2	1	1	2				1																	13
CGTT	-	1																									1
CTAC	-	1																									1
CTCC	-	1																									1
CTCG	-	2																									2
GAAA	-	2																									2
GAAC	-	1																									1
GAAG	-	1																									1
GAAT	-	2		1																							3
GAGC	-	1																									1
GAGG	-	2		1																							3
GAGT	-		1																								1
GATA	-	1																									1
GATG	-	2																									2
GCAC	-	3	7																								10
GCCA	-	1																									1
GCCC	-	1																									1
GCGA	-		1																								1
GCGG	-	1																									1
GCGT	-	5	2	1					1																		9
GCTT	-	1																									1
GGAA	-		1																								1
GGCT	-		1																								1
GGGC	-	1																									1
GGGT	-		1																								1
GGTG	-	1			1																						2
GGTT	-				1																						1
GTCT	-	1																									1
GTGC	-	17	8	4		2	1				1																33
GTGG	-	1																									1
GTTC	-	1																									1
GTTG	-	3																									3
TAAA	-	3	1																								4
TAGA	-	1																									1
TATG	-					1																					1
TATT	-	3	2	1																							6
TCAA	-										1																1
TCAT	-			1																							1
TCGT	-	1																									1
TCTT	-	1	1																								2
TGAC	-	1																									1
TGAG	-	1																									1
TGAT	-	1																									1
TGCC	-	1																									1
TGCG	-	8	3		1																						12
TGGC	-	1																									1
TGGG	-	3																									3
TGGT	-	1	1	1																							3
TGTT	-	1																									1
TTAT	-	3	2	3																							8
TTCC	-			1																							1
TTCT	-		1	1																							2
TTGA	-	1																									1
TTGG	-	1																									1
TTTA	-	5	1	2			1																				9
TTTC	-	1	2																								3
TTTG	-	1		1																							2
AAAAC	3																										3
AAAAG	6	1	1	1																							9
AAAAT	4	1																									5
AAACA	1																										1
AAAGA	2		1																								3
AAATA	3		1																								4
AAATC	1																										1
AAATT	1																										1
AACAC	1	1																									2
AACAG	1																										1
AACGC				1																							1
AAGAA	4	1																									5
AAGAG	1																										1
AAGCC		2																									2
AAGCG	1																										1
AAGGA	1																										1
AAGGG	1																										1
AAGTG	1																										1
AATAA	2																										2
AATAC		1																									1
AATAT	1	1																									2
AATCA	1																										1
AATTG	1																										1
ACAAA	2		1																								3
ACAAC	1																										1
ACACA	9																										9
ACACC	3																										3
ACACG	63	26	5		1		2	1																			98
ACCAA	1																										1
ACCAC	1																										1
ACGAC	19	5	2			1																					27
ACGCA	1		1					1																			3
AGACA	1																										1
AGACG	1																										1
AGAGA	4	1																									5
AGATC	1																										1
AGATT	1																										1
AGCAC	1																										1
AGCCG		1																									1
AGCGA	1																										1
AGCTG	1																										1
ATAAT		1																									1
ATCTT	1																										1
ATGTG	1																										1
ATTTA	1																										1
ATTTG	1				1																						2
ATTTT	1																										1
CAAAA	1																										1
CAAAG	1																										1
CAACA	3																										3
CAACG	1																										1
CACAA										1																	1
CACAC	7	1																									8
CACCA	5	1																									6
CACCC	1																										1
CACCT	1																										1
CACGA	27	6		1	2	1																					37
CACGC	1																										1
CACGG	1		1																								2
CACGT	1																										1
CACTG	1																										1
CAGAA	1																										1
CAGAC	1																										1
CAGAT	1																										1
CAGGC	1																										1
CAGGT	1																										1
CATGT	1																										1
CATTT	3																										3
CCAAC	2	1																									3
CCACA	1					1																					2
CCACC	1																										1
CCACG	1																										1
CCACT	1																										1
CCAGA			1																								1
CCATC	1	1																									2
CCCAA	1																										1
CCCCA	1																										1
CCCCG	1																										1
CCCCT	3	1																									4
CCCGC	1																										1
CCCTC	2																										2
CCGCA	2	2																									4
CCGCC		1																									1
CCGGC	1																										1
CCTCA							1																				1
CCTCT	1																										1
CGAAG	2																										2
CGACA	19	3	1			2																					25
CGAGC	1																										1
CGAGG	1	1																									2
CGATG	1																										1
CGCAA		1																									1
CGCAC	2					1		1																			4
CGCCA	1			1																							2
CGCCC	1																										1
CGCGA	1																										1
CGCTG	2																										2
CGCTT				1																							1
CGTCG	1																										1
CGTGC	3		1																								4
CGTGG	1		1																								2
CGTGT	55	19	3		1	1	2																				81
CGTTT	1																										1
CTATT	1																										1
CTCAC	1	1																									2
CTCAT	1																										1
CTCTC		1																									1
CTCTT	1																										1
CTGCC	1																										1
CTGCG	1																										1
CTTCC	1																										1
CTTCT	1																										1
CTTGC	1																										1
CTTGG	1																										1
CTTGT		1																									1
CTTTC	1																										1
CTTTT	1	1																									2
GAAAA	1																										1
GAACA	1																										1
GAAGC	1																										1
GACAC	12	5	1	1																							19
GAGAA	1																										1
GAGAT	1																										1
GAGCC	1																										1
GAGGA	1																										1
GAGGG	3																										3
GAGGT		1																									1
GAGTG	1																										1
GATGC	1																										1
GATTG	1																										1
GCAAC				1																							1
GCAGA	1																										1
GCATT		1																									1
GCGAC			1																								1
GCGAG	1																										1
GCGGT	2																										2
GCTGC	1																										1
GCTTT	1																										1
GGAGT	1																										1
GGCTT		1																									1
GGGAG	3																										3
GGGGA		1																									1
GGGTT	1																										1
GGTCG	1																										1
GGTCT		1	1																								2
GGTGC	3	1																									4
GGTGG	1																										1
GGTTG	1	1																									2
GTAGG		1																									1
GTCGT	20	5	2					1																			28
GTCTC	1																										1
GTGAG	1																										1
GTGCG	4	3	1	1																							9
GTGCT	2																										2
GTGGC			1																								1
GTGGG	1																										1
GTGGT	2																										2
GTGTC	57	13	3	1	1	2	1																				78
GTGTG	4	4																									8
GTGTT	2																										2
GTTGG	1																										1
GTTTC	4																										4
GTTTG	1																										1
TAAAA	2																										2
TACAC	1																										1
TATTA		1																									1
TATTT		1																									1
TCAAA	1																										1
TCACC		1																									1
TCCCC	1																										1
TCGCA	1																										1
TCGTG	4	4																									8
TCGTT	1																										1
TCTCT	2	1	1																								4
TGAAC	1																										1
TGAGC	1																										1
TGAGG	2																										2
TGATT	2																										2
TGCGG	1																										1
TGCGT	3	1																									4
TGCTT		1																									1
TGGAT	1																										1
TGGGG	1																										1
TGGTA	1																										1
TGTCG	7	2		1																							10
TGTGA	1																										1
TGTGC	2																										2
TGTGT	5	1																									6
TGTTG	2																										2
TTATT	1			1																							2
TTCAC	1																										1
TTCCT	1																										1
TTCTA	1																										1
TTCTC	2																										2
TTCTG	2																										2
TTCTT	1																										1
TTGAT	1																										1
TTGGT	1																										1
TTGTC	1																										1
TTGTG	1																										1
TTGTT	1																										1
TTTAA	1																										1
TTTAT	2	2																									4
TTTCG		1																									1
TTTCT	2	1							1																		4
TTTGA	1																										1
TTTGT	1		1																								2
TTTTA	2	1	1																								4
TTTTC	8	3																									11
AAAAAC			1																								1
AAAAAG	3																										3
AAAAAT	1																										1
AAAACA	1																										1
AAAACG		2																									2
AAAAGA	4	1																									5
AAAATG	1																										1
AAAATT	1																										1
AAAGAA	3																										3
AAAGAG	1																										1
AAAGCA	1																										1
AAAGCG	2																										2
AAAGGA	1																										1
AAAGTC	1																										1
AAATAA			1																								1
AAATAG	1																										1
AACATT		1																									1
AACCCA	1																										1
AACGAA	2																										2
AACGAC		1																									1
AAGAAA	1	1																									2
AAGACG	1																										1
AAGAGG	1																										1
AAGATG	1																										1
AAGCCG	1																										1
AAGCGC	1																										1
AAGGAA	2																										2
AAGGAG	2																										2
AAGGGC		1																									1
AAGGGG	1																										1
AATAAA	2	1																									3
AATAGA	1																										1
AATGTT	1																										1
AATTAT	1																										1
ACAAAC		1																									1
ACAACC	1																										1
ACAACG	1																										1
ACAAGA	1	1																									2
ACAAGC	1																										1
ACACCA		1																									1
ACACGC	5	3	1	1		1																					11
ACCTTC	1																										1
ACGAAG	1																										1
ACGACA		1																									1
ACGAGG	1																										1
ACGATG	1	1																									2
ACGCAC	2	2		1		2																					7
ACGGAA	1																										1
ACGTCG	1																										1
ACTACG	1																										1
AGAAAA	1																										1
AGAAAT	1																										1
AGAAGC	1																										1
AGAAGG	1	1																									2
AGAGCG	2																										2
AGAGGG	1																										1
AGATGA	1																										1
AGATGG	1																										1
AGCCAT	1																										1
AGCCCA	1																										1
AGCCCG		1																									1
AGCGAA	3	1																									4
AGCGAC	1																										1
AGCGGG	1																										1
AGCTTG	1																										1
AGGAAG		1																									1
AGGCGA	1																										1
AGTATT	1																										1
AGTTCG	1																										1
ATCGAG	1																										1
ATCTTT		1																									1
ATGAAA							1																				1
ATGAAG	1																										1
ATGACG	1																										1
ATGGGC	1																										1
ATTAAT	1																										1
ATTATC	1																										1
ATTCGC	1																										1
ATTTAT	1																										1
CAACCC	1																										1
CAACGC	1																										1
CAACGG	1																										1
CAAGAG		1																									1
CAAGCC	1																										1
CAATTT	1																										1
CACACG	15	3	1	1		2																					22
CACACT	1																										1
CACCCC	1																										1
CACCGC	1																										1
CACGCA	8	4	3	2		2																					19
CACGCG	1		1																								2
CAGCAC	1																										1
CAGCGA	1																										1
CAGCTC	1																										1
CATACA	1																										1
CATCAC	3																										3
CATCCT	1																										1
CATCTC	1																										1
CATCTT		1																									1
CCAACG	1																										1
CCAAGG	1																										1
CCACCG	1																										1
CCACGA	2																										2
CCAGAG	1																										1
CCAGGC	1																										1
CCCACA		1																									1
CCCACC	1																										1
CCCGCC	1																										1
CCCGCT	1																										1
CCCTTC	1																										1
CCCTTT	1																										1
CCGCAC	1																										1
CCGCAG	1																										1
CCGCCC	1																										1
CCGCCT	1																										1
CCGGCG	1																										1
CCGTCG	2																										2
CCGTTT	1																										1
CCTCCA	1																										1
CCTCTT	1																										1
CCTTGG	1																										1
CGAAAG	3																										3
CGAAGA	1																										1
CGACAA	1																										1
CGACCA	1																										1
CGACGC	1	1																									2
CGACGT	1																										1
CGAGGC	1	1																									2
CGATGA	1		1																								2
CGCACA	41	9	2	1		1	1																				55
CGCACG	2		1	1																							4
CGCAGC	2																										2
CGCCAA	1																										1
CGCCAT			1																								1
CGCCCA	1																										1
CGCCGA	1																										1
CGCCTC	1																										1
CGCGAC	1																										1
CGCTCT	1																										1
CGCTGC	1																										1
CGGCAG	1																										1
CGGCCA	1																										1
CGGCCT	1																										1
CGGCGA	1																										1
CGGCGT	1	1																									2
CGGCTC	2																										2
CGGGCG	1																										1
CGGGCT	1																										1
CGGTGG	1																										1
CGGTTG	1																										1
CGTCAT	1			1																							2
CGTCGG	1	1																									2
CGTGGT	1	1																									2
CGTGTG	13	2	1			2																					18
CGTTGA	1																										1
CTCCAC		1																									1
CTCCAG	1																										1
CTCCCT	1																										1
CTCCGG	1																										1
CTCCTG	1																										1
CTCCTT	3																										3
CTCGCC	1																										1
CTCGCG	1	1																									2
CTCGGA	1																										1
CTCTTC	1																										1
CTCTTT	1																										1
CTGCGC	1																										1
CTGTGG	1																										1
CTGTGT	1																										1
CTGTTG	1																										1
CTTCAT	1																										1
CTTCCT	1																										1
CTTCGA	1																										1
CTTCGT	1																										1
CTTCTC	2																										2
CTTCTG	1																										1
CTTGCC	1																										1
CTTGCT	1																										1
CTTGGC	1																										1
CTTGGG	1																										1
CTTGGT	1																										1
CTTGTT	1																										1
CTTTCG	4																										4
CTTTCT		1																									1
CTTTTC	1																										1
CTTTTT	1	1																									2
GAAAAA	3																										3
GAAAAG	1																										1
GAAAGC	2																										2
GAAAGG	1																										1
GAAATC		1																									1
GAAGAC	2																										2
GAAGAG	3	2																									5
GAAGAT	6																										6
GAAGCC		1																									1
GAAGGT	1																										1
GACAAC	1																										1
GACGAA	2	2																									4
GACGAG	1																										1
GACGAT	2																										2
GACGGC	1																										1
GACGTC	1																										1
GACTCT	1																										1
GACTGC	1																										1
GAGAAA	1																										1
GAGAAG	1																										1
GAGAGC	1																										1
GAGCAC		1																									1
GAGCCC		1																									1
GAGCCG	1																										1
GAGCGA		1																									1
GAGGAA	2	1																									3
GAGGAC	2																										2
GAGGCC	1																										1
GAGGGC	1																										1
GAGGGT		1																									1
GAGGTG	1																										1
GATGAA	3																										3
GATGAC	1																										1
GATGAG							1																				1
GATGGT	1																										1
GCACAC	3	4																									7
GCACCC	1																										1
GCAGGT	1																										1
GCCACC	1		1																								2
GCCCAA	1																										1
GCCCCA	1																										1
GCCGAA	1																										1
GCCGAG	2																										2
GCCGGC	1																										1
GCCGTC	1																										1
GCCTCG	1																										1
GCCTCT	1																										1
GCGAAT	1																										1
GCGACA	1																										1
GCGAGG	1																										1
GCGATG	1																										1
GCGCCC	1																										1
GCGCGT	1																										1
GCGCTC	1																										1
GCGCTG	1																										1
GCGGCA	2																										2
GCGGCT		2																									2
GCGGGA	1	1																									2
GCGGGC		1																									1
GCGGTA	1																										1
GCGGTG	1																										1
GCGTCG	1	1																									2
GCGTGC	1																										1
GCGTGT	8	1	1																								10
GCTACT			1																								1
GCTCCT	1	1																									2
GCTGAG	1																										1
GCTGGC	1																										1
GCTGGG	1																										1
GCTGGT	1																										1
GCTGTG	1	1																									2
GCTGTT	1																										1
GGAAGA	2																										2
GGAAGG	1																										1
GGAGAA	1																										1
GGAGAT	1																										1
GGAGCG		1																									1
GGAGGC	1																										1
GGCGAC	1																										1
GGCGAT	1																										1
GGCGGT	2																										2
GGCGTC	1																										1
GGCGTT	1																										1
GGCTCC	1																										1
GGCTGG	1																										1
GGCTTG	1																										1
GGGCGC	1																										1
GGGCGT	1																										1
GGGCTC		1																									1
GGGCTT		1																									1
GGGGAG	1																										1
GGGGCA	1																										1
GGGGCC	1																										1
GGGTGC		1																									1
GGGTTG		1																									1
GGTAGT	1																										1
GGTCGT	2																										2
GGTCTT	1																										1
GGTGGC	1		1																								2
GGTTGC	1																										1
GGTTGT	1																										1
GTAGCA	1																										1
GTCAGC	1																										1
GTCATC	1																										1
GTCCTC	2			1																							3
GTCGCT	2																										2
GTCGGC	1		1																								2
GTCGTG	1	1																									2
GTCTCG	1																										1
GTCTTC	1																										1
GTGCGC	2	1																									3
GTGCGT	18	7	3	2	1	1																					32
GTGGAG	1																										1
GTGGCA	1																										1
GTGGCG	1																										1
GTGGTC	1	1																									2
GTGTGC	18	8	2																								28
GTGTGG	1																										1
GTTGGT	1																										1
TAATGA		1																									1
TACCTT	1																										1
TATAAA		1																									1
TATTTA	1		1																								2
TATTTT		1																									1
TCAGAC	1																										1
TCATCG	3																										3
TCATGT		1																									1
TCATTT	1																										1
TCCAGC	1																										1
TCCTCT	4																										4
TCCTGC	1																										1
TCCTTC	5	1																									6
TCCTTG	1																										1
TCGCAT	1																										1
TCGCCC	1	1																									2
TCGCGT	1																										1
TCGCTC	1																										1
TCGCTT	4	1																									5
TCGGCG	1																										1
TCGTCA	1																										1
TCGTCC	4	1																									5
TCGTCT	3																										3
TCGTTC	1																										1
TCTCAC	1																										1
TCTCCG	1																										1
TCTCCT	2																										2
TCTCTT	1																										1
TCTTCA	1																										1
TCTTCC	2																										2
TCTTCG	2				1																						3
TGAAAA							1																				1
TGAAGG	1																										1
TGATGG	1		1																								2
TGATGT	1																										1
TGCGCG				1																							1
TGCGGG	1																										1
TGCGTG	6	2	1			1																					10
TGCTCT	1																										1
TGCTGG	1																										1
TGGAAG	1																										1
TGGCCT	1																										1
TGGCGG	2																										2
TGGGCC					1																						1
TGGGTC	1																										1
TGGTGA	2																										2
TGTCGT	1																										1
TGTGCG	7	6	1			2																					16
TTAATT	1																										1
TTATAA	1																										1
TTATTC	1																										1
TTATTG	1																										1
TTATTT	1																										1
TTCCTC	1																										1
TTCGCA	1																										1
TTCGCT	3																										3
TTCGTT	1		1																								2
TTCTGG	1																										1
TTCTTA	1																										1
TTCTTG	1																										1
TTCTTT	2	2																									4
TTGCCG	1																										1
TTGTTT		1																									1
TTTATT	1																										1
TTTCGC	1																										1
TTTCGT	7																										7
TTTCTT	1	1																									2
TTTGAT	1																										1
TTTGCG			1																								1
TTTGTT	1	1																									2
TTTTAT	1																										1
TTTTCA		1																									1
TTTTCC	2																										2
TTTTCG	2																										2
TTTTCT	5																										5
TTTTGA	1																										1
TTTTGT			1																								1
TTTTTA	1																										1
TTTTTC	2																										2
TTTTTG		1																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		3	1	1	1	2		1	10
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1									1
AC/GT	-	-	-	173	112	97	90	63	52	26	22	10	7	4	4	4	1				4	1					670
AG/CT	-	-	-	55	97	68	62	14	4																		300
AT/AT	-	-	-	5	5	5	4	1	3	1																	24
CG/CG	-	-	-	17	11	3	1																				32
AAC/GTT	-	-	46	31	10	10	2	1			1					1											102
AAG/CTT	-	-	147	56	36	8	2		1																		250
AAT/ATT	-	-	36	21	12	6	4	4	5	1	1			1	2												93
ACC/GGT	-	-	47	28	13	5	3																				96
ACG/CGT	-	-	66	22	9	7	1	2																			107
ACT/AGT	-	-	3		1				1																		5
AGC/CTG	-	-	62	27	22	9	6		3	1	1	1															132
AGG/CCT	-	-	40	29	11	6	1																				87
ATC/ATG	-	-	27	13	7	1																					48
CCG/CGG	-	-	71	16	11	3	3	1																			105
AAAC/GTTT	-	4	2	4	1																						11
AAAG/CTTT	-	8	5	1			1																				15
AAAT/ATTT	-	49	26	12			1	1			1																90
AACC/GGTT	-	9	3	1	1		1																				15
AACG/CGTT	-	6	1																								7
AACT/AGTT	-	1																									1
AAGC/CTTG	-	5																									5
AAGG/CCTT	-	1	1	1																							3
AATC/ATTG	-	3									1																4
AATG/ATTC	-	6		2																							8
AATT/AATT	-	2																									2
ACAG/CTGT	-	1		1																							2
ACAT/ATGT	-					1																					1
ACCC/GGGT	-	9	2		1																						12
ACCG/CGGT	-	1																									1
ACCT/AGGT	-	1																									1
ACGC/CGTG	-	68	34	10	3	5	2		1	1	3																127
ACGT/ACGT	-	2																									2
ACTC/AGTG	-	1	1																								2
ACTG/AGTC	-	2																									2
AGAT/ATCT	-	4	1																								5
AGCC/CTGG	-	4	1																								5
AGCG/CGCT	-	4	1																								5
AGGC/CCTG	-	2																									2
AGGG/CCCT	-	3		1																							4
ATCC/ATGG	-	4																									4
CCCG/CGGG	-	7																									7
CCGG/CCGG	-	1																									1
AAAAC/GTTTT	9		2																								11
AAAAG/CTTTT	25	7	2	1					1																		36
AAAAT/ATTTT	17	5	2	1																							25
AAACC/GGTTT	3																										3
AAACG/CGTTT	6	1																									7
AAAGC/CTTTG	2	1																									3
AAAGG/CCTTT	3																										3
AAATC/ATTTG	8				1																						9
AAATG/ATTTC	3																										3
AAATT/AATTT	3																										3
AACAC/GTGTT	24	2								1																	27
AACAG/CTGTT	5																										5
AACCC/GGGTT	6	2																									8
AACGC/CGTTG	5	2	1	2				1																			11
AACTG/AGTTC	1																										1
AAGAC/CTTGT	2	1																									3
AAGAG/CTCTT	12	2	1																								15
AAGAT/ATCTT	1																										1
AAGCC/CTTGG	1	3																									4
AAGCG/CGCTT	5			1																							6
AAGGC/CCTTG	1																										1
AAGGG/CCCTT	2																										2
AAGTG/ACTTC	2																										2
AATAC/ATTGT		1																									1
AATAG/ATTCT	2																										2
AATAT/ATATT	1	3																									4
AATCC/ATTGG	2																										2
AATCT/AGATT	1																										1
AATGC/ATTGC		1																									1
AATTC/AATTG	1																										1
ACACC/GGTGT	23	6				1																					30
ACACG/CGTGT	283	88	17	4	5	7	5	2																			411
ACACT/AGTGT	1																										1
ACAGC/CTGTG	5																										5
ACATC/ATGTG	2																										2
ACATG/ATGTC	1																										1
ACCAG/CTGGT	1	1	2																								4
ACCAT/ATGGT	1																										1
ACCCC/GGGGT	6																										6
ACCCG/CGGGT	1																										1
ACCCT/AGGGT		1																									1
ACCGC/CGGTG	14	6	1	1		1		1																			24
ACCTC/AGGTG	5	3					1																				9
ACCTG/AGGTC	1																										1
ACGAG/CGTCT	2																										2
ACGCC/CGTGG	4		2	1																							7
ACGCG/CGCGT	2		1																								3
ACGGC/CCGTG	4		2																								6
ACGTC/ACGTG	1																										1
ACTCC/AGTGG	3																										3
ACTGC/AGTGC	1																										1
AGAGC/CTCTG	1																										1
AGAGG/CCTCT	2	1																									3
AGATC/ATCTG	2																										2
AGATG/ATCTC	2																										2
AGCCG/CGGCT	2	1																									3
AGCGC/CGCTG	4																										4
AGCTC/AGCTG	2																										2
AGGCC/CCTGG	1																										1
AGGCG/CCTCG	2	1																									3
AGGGC/CCCTG	1																										1
AGGGG/CCCCT	12	2																									14
ATCCC/ATGGG	1	1																									2
ATCGC/ATGCG	3																										3
CCCCG/CGGGG	3	1																									4
CCCGG/CCGGG	1																										1
AAAAAC/GTTTTT	2	3	2																								7
AAAAAG/CTTTTT	26	6																									32
AAAAAT/ATTTTT	7	2	1																								10
AAAACG/CGTTTT	12	2	1																								15
AAAAGC/CTTTTG	1																										1
AAAAGG/CCTTTT	7																										7
AAAATC/ATTTTG	2																										2
AAAATG/ATTTTC	2	1					2																				5
AAAATT/AATTTT	2																										2
AAACAC/GTGTTT		1																									1
AAACCC/GGGTTT	1																										1
AAACGC/CGTTTG			1																								1
AAACGG/CCGTTT	2																										2
AAAGAG/CTCTTT	4	1																									5
AAAGAT/ATCTTT		1																									1
AAAGCG/CGCTTT	22	2																									24
AAAGGG/CCCTTT	2																										2
AAAGGT/ACCTTT	1																										1
AAAGTC/ACTTTG	1																										1
AAATAG/ATTTCT	3																										3
AAATAT/ATATTT	2	1	1																								4
AAATCG/ATTTCG		1																									1
AAATTG/AATTTC	1																										1
AACAAG/CTTGTT	3	1																									4
AACAAT/ATTGTT	1																										1
AACACC/GGTGTT	1	1																									2
AACAGC/CTGTTG	2																										2
AACATC/ATGTTG	1																										1
AACATG/ATGTTC		1																									1
AACATT/AATGTT	1	1																									2
AACCAC/GGTTGT	2																										2
AACCAG/CTGGTT	1																										1
AACCCC/GGGGTT	1	1																									2
AACCGC/CGGTTG	2																										2
AACGAC/CGTTGT	4	2																									6
AACGAG/CGTTCT	1																										1
AACGCC/CGTTGG	4																										4
AACGCG/CGCGTT	1																										1
AACGGC/CCGTTG	2																										2
AACGTC/ACGTTG	1																										1
AACTCG/AGTTCG	1																										1
AAGAAT/ATTCTT	2																										2
AAGACC/CTTGGT	2																										2
AAGACG/CGTCTT	14	2			1																						17
AAGAGC/CTCTTG	2	1																									3
AAGAGG/CCTCTT	18	4																									22
AAGATG/ATCTTC	14	1																									15
AAGCAC/CTTGTG	1																										1
AAGCAG/CTGCTT	2																										2
AAGCCC/CTTGGG	5	1																									6
AAGCCG/CGGCTT	2	1																									3
AAGCGC/CGCTTG	1																										1
AAGCTC/AGCTTG	1																										1
AAGGAC/CCTTGT	1																										1
AAGGAG/CCTTCT	17	2																									19
AAGGCC/CCTTGG	4																										4
AAGGCG/CCTTCG	1																										1
AAGGGC/CCCTTG	1	1																									2
AAGGGG/CCCCTT	3																										3
AAGGTG/ACCTTC	3																										3
AAGTCG/ACTTCG	1																										1
AAGTGG/ACTTCC	1																										1
AATACT/AGTATT	1																										1
AATATT/AATATT	1																										1
AATGAT/ATCATT	1	1																									2
AATGCG/ATTCGC	4																										4
AATTAT/AATTAT	2																										2
ACACAG/CTGTGT	1																										1
ACACAT/ATGTGT	1																										1
ACACCC/GGGTGT	1	1																									2
ACACGC/CGTGTG	144	51	16	8	1	14	1																				235
ACACTC/AGTGTG	1																										1
ACAGCC/CTGTGG	2	1																									3
ACAGCG/CGCTGT	5																										5
ACCACG/CGTGGT	8	3																									11
ACCACT/AGTGGT	1																										1
ACCAGC/CTGGTG	3																										3
ACCATC/ATGGTG	7		1																								8
ACCCAG/CTGGGT	1																										1
ACCCCC/GGGGGT	2																										2
ACCCGC/CGGGTG	3	1																									4
ACCCTC/AGGGTG		1																									1
ACCGAG/CGGTCT	1																										1
ACCGCC/CGGTGG	11		2																								13
ACCGCG/CGCGGT	1																										1
ACCGCT/AGCGGT	1																										1
ACCTCC/AGGTGG	3	1																									4
ACCTGC/AGGTGC	1																										1
ACGACT/AGTCGT	1																										1
ACGAGC/CGTGCT		1																									1
ACGAGG/CCTCGT	10	1		1																							12
ACGATG/ATCGTC	12	1	1	1																							15
ACGCCC/CGTGGG	2																										2
ACGCCG/CGGCGT	8	4	1																								13
ACGCGC/CGCGTG	7	1	2	2																							12
ACGCTG/AGCGTC	1																										1
ACGGAG/CCGTCT	1																										1
ACGGCC/CCGTGG	1																										1
ACGGCG/CCGTCG	6																										6
ACGTCG/ACGTCG	3																										3
ACTCAG/AGTCTG	1																										1
ACTCGG/AGTCCG	1																										1
ACTCTC/AGAGTG	1																										1
ACTCTG/AGAGTC	1																										1
ACTGCC/AGTGGC	1																										1
ACTGCG/AGTCGC	1																										1
ACTGCT/AGCAGT	1		1																								2
AGAGCC/CTCTGG	1																										1
AGAGCG/CGCTCT	5	1																									6
AGAGGC/CCTCTG	1																										1
AGAGGG/CCCTCT	2																										2
AGATCG/ATCTCG	1																										1
AGATGG/ATCTCC	3																										3
AGCAGG/CCTGCT	3	1																									4
AGCCAT/ATGGCT	1																										1
AGCCCC/CTGGGG	3																										3
AGCCCG/CGGGCT	1	3																									4
AGCCGC/CGGCTG	3	2																									5
AGCCGG/CCGGCT	5																										5
AGCCTC/AGGCTG	1																										1
AGCGCC/CGCTGG	2																										2
AGCGCG/CGCGCT	2	1																									3
AGCGGC/CCGCTG	4																										4
AGCGGG/CCCGCT	3	2																									5
AGCTCC/AGCTGG	3																										3
AGGATG/ATCCTC	1						1																				2
AGGCCC/CCTGGG	1				1																						2
AGGCCG/CCTCGG	6	1																									7
AGGCGC/CCTGCG	1																										1
AGGCGG/CCGCCT	3																										3
AGGGCG/CCCTCG	4	1																									5
AGGGGC/CCCCTG	1																										1
AGGGGG/CCCCCT	1																										1
ATCGCC/ATGGCG	2		1																								3
ATGCCC/ATGGGC	1																										1
CCCCCG/CGGGGG	2																										2
CCCCGG/CCGGGG	1																										1
CCCGCG/CGCGGG	3	1																									4
CCGGCG/CCGGCG	2																										2
