Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_935749045.1/fasta/hub_GCA_935749045.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              782
Total size of examined sequences (bp):           11723177
Total number of identified SSRs:                 401
Number of SSR containing sequences:              241
Number of sequences containing more than 1 SSR:  91
Number of SSRs present in compound formation:    45


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	55
3	170
4	20
5	37
6	118

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																									1	1
AC	-	-	-	3	1																																						4
AG	-	-	-	4																																							4
CA	-	-	-	1																																							1
CG	-	-	-	4																																							4
CT	-	-	-	6	2																																						8
GA	-	-	-	11	3																																						14
GC	-	-	-	6	1																																						7
GT	-	-	-	2																																							2
TC	-	-	-	7	1																																						8
TG	-	-	-	3																																							3
AAC	-	-	1																																								1
AAG	-	-	10																																								10
AAT	-	-	1																																								1
ACA	-	-	1	1	1																																						3
ACG	-	-	1																																								1
AGA	-	-	3	1																																							4
AGG	-	-	3	1																																							4
ATC	-	-	2	1	2																																						5
ATG	-	-		1																																							1
CAA	-	-	13	1																																							14
CAC	-	-		1		1																																					2
CAG	-	-	1																																								1
CAT	-	-	8	3	2	1	1			2																																	17
CCA	-	-		1																																							1
CCG	-	-	2																																								2
CCT	-	-	3																																								3
CGA	-	-	2																																								2
CGC	-	-	1	1																																							2
CGG	-	-	1																																								1
CGT	-	-	1																																								1
CTC	-	-	10	1																																							11
CTG	-	-	2	2																																							4
CTT	-	-	6																																								6
GAA	-	-	2	1	1																																						4
GAC	-	-		1																																							1
GAG	-	-	3	4																																							7
GAT	-	-	5	2	1		1																																				9
GCA	-	-	3																																								3
GCG	-	-	1		2																																						3
GCT	-	-	4																																								4
GGA	-	-	3	1																																							4
GTC	-	-	3																																								3
GTG	-	-	1	1																																							2
GTT	-	-	1																																								1
TCA	-	-	3	1	1																																						5
TCC	-	-	4		1																																						5
TCG	-	-	2																																								2
TCT	-	-	2	1																																							3
TGA	-	-	4	1		2	1					1																															9
TGC	-	-	3	1																																							4
TGT	-	-				1																																					1
TTC	-	-	1	1																																							2
TTG	-	-					1																																				1
AATC	-	2			1																																						3
AGCG	-	1																																									1
ATCA	-	1																																									1
ATTG	-		1																																								1
GAGG	-	2																																									2
GATT	-	1																																									1
GGAG	-	1																																									1
GTTT	-	1																																									1
TCAA	-		1																																								1
TCAT	-	1																																									1
TGAT	-	3	1					1																																			5
TTGA	-	1																																									1
TTGT	-	1																																									1
AAACG	1																																										1
AAATC	1																																										1
AACCA	1																																										1
AAGAA	1																																										1
AATGA	1																																										1
AGAGA	1																																										1
ATTCG	1																																										1
ATTCT	1																																										1
CATCC	1																																										1
CCACT	1																																										1
CCCTC	1																																										1
CCTCT	1																																										1
CCTTC	1																																										1
CGAAA	1																																										1
CGCGC	1																																										1
CTCCT		1																																									1
CTCGA	1																																										1
CTCTC	2																																										2
CTGAA	1																																										1
GAATG	1																																										1
GACGA	1																																										1
GAGAG	1																																										1
GAGGG	1																																										1
GATTT	1																																										1
GCGAC	1																																										1
GCGCT	1																																										1
GCTGC	1																																										1
GGAGA	1																																										1
TCACA	1																																										1
TCGCA	1																																										1
TCGCC	1																																										1
TGATG	1																																										1
TTGTT	1																																										1
TTTCA	2																																										2
TTTCC	1																																										1
AAATTC	1																																										1
AAGAGA	1																																										1
AAGTCG	1																																										1
AATGGT		1																																									1
ACATCA	1																																										1
ACCACA			1																																								1
ACCATC						1																																					1
ACTCCA	2		1		1																																						4
ACTCCC				1																																							1
ACTCCT	1																																										1
AGAAGG	1																																										1
AGAGGA	1																																										1
AGATGA	1																																										1
AGCCCA	1																																										1
AGGAGA	1																																										1
AGGCGG	1																																										1
AGTGGC	1																																										1
ATGCAG	1																																										1
ATTCAA	1																																										1
ATTTGA	1																																										1
CACCAA	1																																										1
CAGCAA	1																																										1
CAGCGA		1																																									1
CAGGTT		1																																									1
CAGTGA	1																																										1
CATCAC	2																																										2
CATCGG	1																																										1
CCAGGA	1																																										1
CCATCG	2																																										2
CGAAGC	1																																										1
CGACAG	1																																										1
CGATGG	1																																										1
CGATTG	1																																										1
CGGCGT	1																																										1
CTCCCT	1																																										1
CTCCTT	1																																										1
CTCGCG	1																																										1
CTCTTC	1																																										1
CTGCTC	1																																										1
CTGCTT	1																																										1
CTGGAG	1																																										1
CTTCAG	1																																										1
CTTCCT	1																																										1
CTTCGT	1																																										1
CTTCTC	2																																										2
GAAGAG	2																																										2
GAAGGA	1																																										1
GACAGC	1																																										1
GACGAG	2																																										2
GACGCA			1																																								1
GACGGT	1																																										1
GAGAAG	1																																										1
GAGAGT	1																																										1
GAGATG	1																																										1
GAGGAA	3																																										3
GAGGAC		1																																									1
GAGGTT	1																																										1
GATGAC	1																																										1
GATGGT		1	1																																								2
GCAGCT	2																																										2
GCCAAG	1																																										1
GCGGTC	1																																										1
GCTGGC	1																																										1
GGAGAA	1																																										1
GGAGAC	1																																										1
GGAGAT	1																																										1
GGAGTG		1																																									1
GGCGCT	1																																										1
GGCGGA	1																																										1
GGCTCA	1																																										1
GGCTTG		1																																									1
GGGAGA	1																																										1
GGGTTC	1																																										1
GGTGTC	1																																										1
GTCCTC	1																																										1
GTCGCT	1																																										1
TATCAA	1																																										1
TATTGT	1																																										1
TCACAG	1																																										1
TCATTA	1																																										1
TCCAAT	1																																										1
TCCCTT	1																																										1
TCCGAC	1																																										1
TCCTCG	2																																										2
TCCTTT	2																																										2
TCGCAG	2																																										2
TCGCTC	1																																										1
TCGGAA	1																																										1
TCTTCC	1																																										1
TCTTTT	1																																										1
TGAAAG	1																																										1
TGATGG	1																																										1
TGGTGA	2																																										2
TGTGAT	1																																										1
TTCAAA	1																																										1
TTCTCC	2																																										2
TTGTGA	1																																										1
TTGTGG	1																																										1
TTTGAA	1	2																																									3

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																									1	1
AC/GT	-	-	-	9	1																																						10
AG/CT	-	-	-	28	6																																						34
CG/CG	-	-	-	10	1																																						11
AAC/GTT	-	-	16	2	1	1	1																																				21
AAG/CTT	-	-	24	4	1																																						29
AAT/ATT	-	-	1																																								1
ACC/GGT	-	-	1	3		1																																					5
ACG/CGT	-	-	9	1																																							10
AGC/CTG	-	-	13	3																																							16
AGG/CCT	-	-	26	7	1																																						34
ATC/ATG	-	-	22	9	6	3	3			2		1																															46
CCG/CGG	-	-	5	1	2																																						8
AAAC/GTTT	-	2																																									2
AATC/ATTG	-	8	3		1			1																																			13
AATG/ATTC	-	1																																									1
AGCG/CGCT	-	1																																									1
AGGG/CCCT	-	3																																									3
AAAAC/GTTTT	1																																										1
AAAAG/CTTTT	1																																										1
AAACC/GGTTT	1																																										1
AAACG/CGTTT	2																																										2
AAAGG/CCTTT	1																																										1
AAATC/ATTTG	2																																										2
AAATG/ATTTC	3																																										3
AACTG/AGTTC	1																																										1
AAGAG/CTCTT	1																																										1
AAGGG/CCCTT	1																																										1
AATAG/ATTCT	1																																										1
AATCG/ATTCG	1																																										1
AATGG/ATTCC	1																																										1
ACATC/ATGTG	2																																										2
ACGAG/CGTCT	1																																										1
ACGCG/CGCGT	1																																										1
ACTCC/AGTGG	1																																										1
ACTCG/AGTCG	1																																										1
AGAGG/CCTCT	5	1																																									6
AGCGC/CGCTG	2																																										2
AGGCG/CCTCG	1																																										1
AGGGG/CCCCT	2																																										2
ATCCC/ATGGG	1																																										1
ATCGC/ATGCG	1																																										1
CCGCG/CGCGG	1																																										1
AAAAAG/CTTTTT	1																																										1
AAAAGG/CCTTTT	2																																										2
AAAGAG/CTCTTT	1																																										1
AAAGGG/CCCTTT	1																																										1
AAAGTG/ACTTTC	1																																										1
AAATTC/AATTTG	5	2																																									7
AACAAT/ATTGTT	1																																										1
AACACC/GGTGTT	1																																										1
AACAGC/CTGTTG	1																																										1
AACATC/ATGTTG	1																																										1
AACCAC/GGTTGT	1		1																																								2
AACCCG/CGGGTT	1																																										1
AACCTC/AGGTTG	1																																										1
AACCTG/AGGTTC		1																																									1
AACTCC/AGTTGG	2		1		1																																						4
AAGACG/CGTCTT	1																																										1
AAGAGG/CCTCTT	9																																										9
AAGATG/ATCTTC	1																																										1
AAGCAG/CTGCTT	1																																										1
AAGCCC/CTTGGG	1	1																																									2
AAGCCG/CGGCTT	1																																										1
AAGCTG/AGCTTC	1																																										1
AAGGAG/CCTTCT	10																																										10
AAGGCC/CCTTGG	1																																										1
AAGTCG/ACTTCG	1																																										1
AATATC/ATATTG	1																																										1
AATCAC/ATTGTG	2																																										2
AATCGC/ATTGCG	1																																										1
AATCGG/ATTCCG	1																																										1
AATGAT/ATCATT	1																																										1
AATGGT/ACCATT		1																																									1
AATTCC/AATTGG	1																																										1
ACACCG/CGGTGT	1																																										1
ACAGCG/CGCTGT	3	1																																									4
ACAGTC/ACTGTG	1																																										1
ACAGTG/ACTGTC	1																																										1
ACCAGG/CCTGGT	1																																										1
ACCATC/ATGGTG	5	1	1			1																																					8
ACCGCG/CGCGGT	1																																										1
ACCGTC/ACGGTG	1																																										1
ACGAGG/CCTCGT	5	1																																									6
ACGATG/ATCGTC	1																																										1
ACGCAG/CGTCTG			1																																								1
ACGCCG/CGGCGT	1																																										1
ACGGAG/CCGTCT	1																																										1
ACTCCC/AGTGGG		1		1																																							2
ACTCCG/AGTCGG	1																																										1
ACTCCT/AGGAGT	1																																										1
ACTCTC/AGAGTG	1																																										1
ACTGCC/AGTGGC	1																																										1
ACTGCG/AGTCGC	2																																										2
AGAGCG/CGCTCT	1																																										1
AGAGGG/CCCTCT	2																																										2
AGATGC/ATCTGC	1																																										1
AGATGG/ATCTCC	2																																										2
AGCAGG/CCTGCT	1																																										1
AGCCTG/AGGCTC	1																																										1
AGCGCC/CGCTGG	2																																										2
AGCGCG/CGCGCT	1																																										1
AGCTCC/AGCTGG	1																																										1
AGCTGC/AGCTGC	2																																										2
AGGCGG/CCGCCT	2																																										2
ATCGCC/ATGGCG	3																																										3
ATCGGC/ATGCCG	1																																										1
