Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_910574485.1/fasta/hub_GCA_910574485.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              264
Total size of examined sequences (bp):           4772315
Total number of identified SSRs:                 53
Number of SSR containing sequences:              47
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	10
4	10
5	12
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	2		2
TA	-	-	-	4	1	5
ACA	-	-		1		1
ACC	-	-	1			1
AGC	-	-	1			1
ATT	-	-	1			1
CAA	-	-	1			1
CCA	-	-		1		1
TCA	-	-	1			1
TGA	-	-	1			1
TGC	-	-	1			1
TGG	-	-	1			1
AATG	-	2	2			4
ATTA	-	1				1
CAAA	-	1				1
CATT	-		2			2
TATT	-	1				1
TTAT	-	1				1
AAAGC	1					1
ATTAA	1					1
ATTTA	1					1
GAATG	1					1
TAATG	1					1
TACCT	1					1
TATGA	1					1
TATTG	1					1
TCATA	1					1
TCCAT	1					1
TTCTT	1					1
TTTTA	1					1
AAGCTA	1					1
ACCACT				1		1
ACTGCT	1					1
AGCACC	1					1
AGGGGT	1					1
ATAGAT		1				1
GAAGGG	1					1
GATTTA	1					1
TAAGGA	1					1
TATCAA	1					1
TGAAGA	1					1
TGATGT	1					1
TTATCA	1					1
TTCTGG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	6	1	7
AAC/GTT	-	-	1	1		2
AAT/ATT	-	-	1			1
ACC/GGT	-	-	2	1		3
AGC/CTG	-	-	2			2
ATC/ATG	-	-	2			2
AAAC/GTTT	-	1				1
AAAT/ATTT	-	2				2
AATG/ATTC	-	2	4			6
AATT/AATT	-	1				1
AAAAG/CTTTT	1					1
AAAAT/ATTTT	1					1
AAAGC/CTTTG	1					1
AAATT/AATTT	2					2
AAGGT/ACCTT	1					1
AATAC/ATTGT	1					1
AATGG/ATTCC	2					2
AATGT/ACATT	1					1
ATATC/ATATG	2					2
AAAGCT/AGCTTT	1					1
AAATCT/AGATTT	1					1
AACATC/ATGTTG	1					1
AACCAG/CTGGTT	1					1
AAGATG/ATCTTC	1					1
AAGGAT/ATCCTT	1					1
AAGGGG/CCCCTT	1					1
AATATC/ATATTG	1					1
AATGAT/ATCATT	1					1
ACCACT/AGTGGT				1		1
ACCAGC/CTGGTG	1					1
ACCCCT/AGGGGT	1					1
ACTGCT/AGCAGT	1					1
AGATAT/ATATCT		1				1
