Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-2/megassr/results/hub_GCA_905119635.1/fasta/hub_GCA_905119635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              19
Total size of examined sequences (bp):           38906
Total number of identified SSRs:                 5
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AC	-	-	-	1				1
AT	-	-	-	1				1
GA	-	-	-				1	1
TA	-	-	-	1				1
ATC	-	-			1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-	1				1
AG/CT	-	-	-				1	1
AT/AT	-	-	-	2				2
ATC/ATG	-	-			1			1
