Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-27/megassr/results/hub_GCA_903189895.1/fasta/hub_GCA_903189895.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              45
Total size of examined sequences (bp):           5098352
Total number of identified SSRs:                 37
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	9
3	15
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
CG	-	-	-	4	1															5
GC	-	-	-	3	1															4
CCG	-	-	1																	1
CGC	-	-	1																	1
CGG	-	-	2	1																3
CGT	-	-	1																	1
CTG	-	-	1																	1
GAT	-	-	1																	1
GCA	-	-	2																	2
GCC	-	-	2																	2
GCT	-	-	1																	1
GGC	-	-	1																	1
TCG	-	-	1																	1
CCGCG	1																			1
CGCCG	1																			1
CGCGC	1																			1
GGCGC	1																			1
CCAGGC	1																			1
CCGGAG		1																		1
CGACTT	1																			1
CGGGAG		1																		1
GCGCTG	1																			1
GGCGCC	1																			1
TCTACC		1																		1
TCTTCG	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
CG/CG	-	-	-	7	2															9
ACG/CGT	-	-	2																	2
AGC/CTG	-	-	4																	4
ATC/ATG	-	-	1																	1
CCG/CGG	-	-	7	1																8
CCGCG/CGCGG	4																			4
AAGACG/CGTCTT	1																			1
AAGTCG/ACTTCG	1																			1
ACCTCT/AGAGGT		1																		1
AGCCGG/CCGGCT		1																		1
AGCGCC/CGCTGG	1																			1
AGCGGG/CCCGCT		1																		1
AGGCCC/CCTGGG	1																			1
CCGGCG/CCGGCG	1																			1
