Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-26/megassr/results/hub_GCA_903189885.1/fasta/hub_GCA_903189885.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              55
Total size of examined sequences (bp):           5130288
Total number of identified SSRs:                 37
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	9
3	15
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																		1	1
CG	-	-	-	3	2																																															5
GC	-	-	-	4																																																4
ATC	-	-	1																																																	1
CAG	-	-	1																																																	1
CCG	-	-	3																																																	3
CGC	-	-	1																																																	1
CGG	-	-		1																																																1
CGT	-	-	1																																																	1
CTG	-	-	2																																																	2
GAC	-	-	1																																																	1
GCC	-	-	2																																																	2
GCG	-	-	1																																																	1
GCT	-	-	1																																																	1
CCGCG	1																																																			1
CGCCG	1																																																			1
GCGCC	1																																																			1
GGCGC	1																																																			1
CAGCGC	1																																																			1
CCAGGC	1																																																			1
CCGGAG		1																																																		1
CGACTT	1																																																			1
CGGGAG		1																																																		1
GGCGCC	1																																																			1
TAGAGG		1																																																		1
TCTTCG	1																																																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																		1	1
CG/CG	-	-	-	7	2																																															9
ACG/CGT	-	-	2																																																	2
AGC/CTG	-	-	4																																																	4
ATC/ATG	-	-	1																																																	1
CCG/CGG	-	-	7	1																																																8
CCGCG/CGCGG	4																																																			4
AAGACG/CGTCTT	1																																																			1
AAGTCG/ACTTCG	1																																																			1
ACCTCT/AGAGGT		1																																																		1
AGCCGG/CCGGCT		1																																																		1
AGCGCC/CGCTGG	1																																																			1
AGCGGG/CCCGCT		1																																																		1
AGGCCC/CCTGGG	1																																																			1
CCGGCG/CCGGCG	1																																																			1
