Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCA_902809495.1/fasta/hub_GCA_902809495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           2528352
Total number of identified SSRs:                 8
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
ATA	-	-		1	1
ACTCG	1				1
ATGGC	1				1
CGGGA		1			1
CATCTG	1				1
GAGCGC	1				1
GCCGAG	1				1
GGCTGT		1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AAT/ATT	-	-		1	1
ACGGG/CCCGT		1			1
ACTCG/AGTCG	1				1
ATGCC/ATGGC	1				1
ACAGCC/CTGTGG		1			1
AGATGC/ATCTGC	1				1
AGCGCG/CGCGCT	1				1
AGGCCG/CCTCGG	1				1
