Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-37/megassr/results/hub_GCA_902808005.1/fasta/hub_GCA_902808005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              40
Total size of examined sequences (bp):           2453924
Total number of identified SSRs:                 10
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	3
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
CCA	-	-	2	2
CTG	-	-	1	1
ATGGC	1			1
CGGGA		1		1
AAGCAG	1			1
CATCTG	1			1
GAGCGC	1			1
GCCGAG	1			1
GGTGCA	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
ACC/GGT	-	-	2	2
AGC/CTG	-	-	1	1
ACGGG/CCCGT		1		1
ATGCC/ATGGC	1			1
AAGCAG/CTGCTT	1			1
ACCTGC/AGGTGC	1			1
AGATGC/ATCTGC	1			1
AGCGCG/CGCGCT	1			1
AGGCCG/CCTCGG	1			1
