Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-35/megassr/results/hub_GCA_902807595.1/fasta/hub_GCA_902807595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              51
Total size of examined sequences (bp):           2535067
Total number of identified SSRs:                 8
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	total
ATGGC	1		1
CACAG	1		1
AAGCAG	1		1
CATCTG	1		1
GCCGAG	1		1
GGCTGT		1	1
GGTGCA	1		1
TGTTGG	1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	total
ACAGC/CTGTG	1		1
ATGCC/ATGGC	1		1
AACACC/GGTGTT	1		1
AAGCAG/CTGCTT	1		1
ACAGCC/CTGTGG		1	1
ACCTGC/AGGTGC	1		1
AGATGC/ATCTGC	1		1
AGGCCG/CCTCGG	1		1
